Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4210 and GFF4211 are separated by 39 nucleotides GFF4211 and GFF4212 overlap by 14 nucleotides GFF4212 and GFF4213 overlap by 4 nucleotides GFF4213 and GFF4214 are separated by 2 nucleotides
GFF4210 - Efflux pump membrane transporter BepG, at 237,330 to 240,491
GFF4210
GFF4211 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 240,531 to 241,232
GFF4211
GFF4212 - Lipopolysaccharide export system ATP-binding protein LptB, at 241,219 to 242,004
GFF4212
GFF4213 - hypothetical protein, at 242,001 to 242,957
GFF4213
GFF4214 - High-affinity branched-chain amino acid transport system permease protein LivH, at 242,960 to 243,832
GFF4214
Position (kb) 241
242
243 Strain fitness (log2 ratio) -2
-1
0
1 at 240.396 kb on + strand at 240.397 kb on - strand at 240.397 kb on - strand at 240.544 kb on + strand at 240.544 kb on + strand at 240.544 kb on + strand at 240.622 kb on + strand, within GFF4211 at 240.622 kb on + strand, within GFF4211 at 240.623 kb on - strand, within GFF4211 at 241.262 kb on + strand at 241.263 kb on - strand at 241.826 kb on - strand, within GFF4212 at 241.848 kb on - strand, within GFF4212 at 241.994 kb on - strand at 242.104 kb on + strand, within GFF4213 at 242.293 kb on + strand, within GFF4213 at 242.293 kb on + strand, within GFF4213 at 242.294 kb on - strand, within GFF4213 at 242.294 kb on - strand, within GFF4213 at 242.465 kb on - strand, within GFF4213 at 242.627 kb on - strand, within GFF4213 at 242.629 kb on + strand, within GFF4213 at 242.629 kb on + strand, within GFF4213 at 242.630 kb on - strand, within GFF4213 at 242.666 kb on - strand, within GFF4213 at 242.752 kb on + strand, within GFF4213 at 242.752 kb on + strand, within GFF4213 at 242.872 kb on + strand at 242.875 kb on + strand at 242.875 kb on + strand at 242.876 kb on - strand at 242.988 kb on + strand at 242.988 kb on + strand at 242.988 kb on + strand at 242.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 240,396 + -1.0 240,397 - +0.4 240,397 - -1.5 240,544 + +0.5 240,544 + +1.1 240,544 + -2.1 240,622 + GFF4211 0.13 +0.3 240,622 + GFF4211 0.13 -1.0 240,623 - GFF4211 0.13 +0.0 241,262 + -0.2 241,263 - -0.2 241,826 - GFF4212 0.77 +0.2 241,848 - GFF4212 0.80 -0.1 241,994 - +0.3 242,104 + GFF4213 0.11 +0.9 242,293 + GFF4213 0.31 -1.8 242,293 + GFF4213 0.31 +0.3 242,294 - GFF4213 0.31 -0.4 242,294 - GFF4213 0.31 -0.7 242,465 - GFF4213 0.48 -0.7 242,627 - GFF4213 0.65 -1.1 242,629 + GFF4213 0.66 +1.0 242,629 + GFF4213 0.66 -1.1 242,630 - GFF4213 0.66 +0.5 242,666 - GFF4213 0.69 +0.1 242,752 + GFF4213 0.78 -0.9 242,752 + GFF4213 0.78 -0.6 242,872 + +0.0 242,875 + -1.8 242,875 + -0.1 242,876 - -0.3 242,988 + +0.8 242,988 + +0.2 242,988 + -2.1 242,989 - +0.7
Or see this region's nucleotide sequence