Strain Fitness in Xanthobacter sp. DMC5 around GFF4176

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4175 and GFF4176 are separated by 117 nucleotidesGFF4176 and GFF4177 are separated by 5 nucleotidesGFF4177 and GFF4178 are separated by 30 nucleotides GFF4175 - Oligo-1,6-glucosidase, at 189,678 to 191,303 GFF4175 GFF4176 - hypothetical protein, at 191,421 to 192,392 GFF4176 GFF4177 - hypothetical protein, at 192,398 to 192,631 GFF4177 GFF4178 - Fumarate reductase flavoprotein subunit, at 192,662 to 194,410 GFF4178 Position (kb) 191 192 193Strain fitness (log2 ratio) -3 -2 -1 0 1at 190.450 kb on + strand, within GFF4175at 190.450 kb on + strand, within GFF4175at 190.451 kb on - strand, within GFF4175at 190.477 kb on + strand, within GFF4175at 190.572 kb on - strand, within GFF4175at 190.573 kb on + strand, within GFF4175at 190.574 kb on - strand, within GFF4175at 190.574 kb on - strand, within GFF4175at 190.574 kb on - strand, within GFF4175at 190.574 kb on - strand, within GFF4175at 190.792 kb on + strand, within GFF4175at 190.793 kb on - strand, within GFF4175at 190.793 kb on - strand, within GFF4175at 190.793 kb on - strand, within GFF4175at 190.796 kb on - strand, within GFF4175at 190.796 kb on - strand, within GFF4175at 190.799 kb on - strand, within GFF4175at 190.819 kb on + strand, within GFF4175at 190.819 kb on + strand, within GFF4175at 190.820 kb on - strand, within GFF4175at 190.820 kb on - strand, within GFF4175at 190.820 kb on - strand, within GFF4175at 190.897 kb on + strand, within GFF4175at 190.897 kb on + strand, within GFF4175at 190.898 kb on - strand, within GFF4175at 190.898 kb on - strand, within GFF4175at 191.072 kb on - strand, within GFF4175at 191.072 kb on - strand, within GFF4175at 191.087 kb on - strand, within GFF4175at 191.113 kb on + strand, within GFF4175at 191.113 kb on + strand, within GFF4175at 191.114 kb on - strand, within GFF4175at 191.114 kb on - strand, within GFF4175at 191.158 kb on + strandat 191.159 kb on - strandat 191.231 kb on - strandat 191.231 kb on - strandat 191.239 kb on + strandat 191.361 kb on + strandat 191.362 kb on - strandat 191.488 kb on + strandat 191.728 kb on + strand, within GFF4176at 191.728 kb on + strand, within GFF4176at 191.828 kb on + strand, within GFF4176at 191.906 kb on - strand, within GFF4176at 192.411 kb on + strandat 192.411 kb on + strandat 192.468 kb on + strand, within GFF4177at 192.468 kb on + strand, within GFF4177at 192.484 kb on - strand, within GFF4177at 192.484 kb on - strand, within GFF4177at 192.484 kb on - strand, within GFF4177at 192.700 kb on - strandat 192.735 kb on + strandat 192.735 kb on + strandat 192.735 kb on + strandat 192.735 kb on + strandat 192.786 kb on + strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.787 kb on - strandat 192.877 kb on - strand, within GFF4178at 193.047 kb on + strand, within GFF4178at 193.048 kb on - strand, within GFF4178at 193.074 kb on + strand, within GFF4178at 193.074 kb on + strand, within GFF4178at 193.074 kb on + strand, within GFF4178at 193.075 kb on - strand, within GFF4178at 193.161 kb on + strand, within GFF4178at 193.162 kb on - strand, within GFF4178at 193.188 kb on + strand, within GFF4178at 193.188 kb on + strand, within GFF4178at 193.188 kb on + strand, within GFF4178at 193.189 kb on - strand, within GFF4178at 193.189 kb on - strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.242 kb on + strand, within GFF4178at 193.243 kb on - strand, within GFF4178at 193.243 kb on - strand, within GFF4178at 193.278 kb on + strand, within GFF4178at 193.279 kb on - strand, within GFF4178at 193.390 kb on - strand, within GFF4178at 193.390 kb on - strand, within GFF4178

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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190,450 + GFF4175 0.47 +0.7
190,450 + GFF4175 0.47 -0.1
190,451 - GFF4175 0.48 +0.5
190,477 + GFF4175 0.49 +0.6
190,572 - GFF4175 0.55 -0.3
190,573 + GFF4175 0.55 -0.8
190,574 - GFF4175 0.55 -1.1
190,574 - GFF4175 0.55 +0.9
190,574 - GFF4175 0.55 -0.9
190,574 - GFF4175 0.55 -0.9
190,792 + GFF4175 0.69 -0.2
190,793 - GFF4175 0.69 -0.3
190,793 - GFF4175 0.69 +0.5
190,793 - GFF4175 0.69 +0.4
190,796 - GFF4175 0.69 -0.2
190,796 - GFF4175 0.69 -1.0
190,799 - GFF4175 0.69 +1.2
190,819 + GFF4175 0.70 -0.7
190,819 + GFF4175 0.70 -1.1
190,820 - GFF4175 0.70 +0.8
190,820 - GFF4175 0.70 -0.4
190,820 - GFF4175 0.70 -0.6
190,897 + GFF4175 0.75 -0.2
190,897 + GFF4175 0.75 +0.7
190,898 - GFF4175 0.75 -0.1
190,898 - GFF4175 0.75 +0.9
191,072 - GFF4175 0.86 -1.3
191,072 - GFF4175 0.86 +0.8
191,087 - GFF4175 0.87 +0.5
191,113 + GFF4175 0.88 -0.9
191,113 + GFF4175 0.88 +0.7
191,114 - GFF4175 0.88 +0.7
191,114 - GFF4175 0.88 +1.1
191,158 + +0.2
191,159 - -0.8
191,231 - +0.3
191,231 - -1.0
191,239 + +0.4
191,361 + +0.0
191,362 - -0.9
191,488 + -0.3
191,728 + GFF4176 0.32 -0.5
191,728 + GFF4176 0.32 -0.7
191,828 + GFF4176 0.42 +0.0
191,906 - GFF4176 0.50 -0.3
192,411 + -1.8
192,411 + +0.1
192,468 + GFF4177 0.30 -0.8
192,468 + GFF4177 0.30 -0.9
192,484 - GFF4177 0.37 +1.2
192,484 - GFF4177 0.37 -0.5
192,484 - GFF4177 0.37 +0.8
192,700 - +0.2
192,735 + -0.5
192,735 + -0.5
192,735 + -0.3
192,735 + +0.5
192,786 + -0.4
192,787 - -0.8
192,787 - -1.1
192,787 - -1.2
192,787 - -0.7
192,787 - +0.6
192,787 - -0.0
192,877 - GFF4178 0.12 +0.3
193,047 + GFF4178 0.22 -0.6
193,048 - GFF4178 0.22 -0.3
193,074 + GFF4178 0.24 +0.6
193,074 + GFF4178 0.24 +0.4
193,074 + GFF4178 0.24 -0.3
193,075 - GFF4178 0.24 -0.6
193,161 + GFF4178 0.29 -2.9
193,162 - GFF4178 0.29 +0.5
193,188 + GFF4178 0.30 +0.5
193,188 + GFF4178 0.30 -1.7
193,188 + GFF4178 0.30 +0.4
193,189 - GFF4178 0.30 -2.8
193,189 - GFF4178 0.30 -0.2
193,242 + GFF4178 0.33 +0.7
193,242 + GFF4178 0.33 +0.5
193,242 + GFF4178 0.33 -0.2
193,242 + GFF4178 0.33 -0.4
193,243 - GFF4178 0.33 +0.9
193,243 - GFF4178 0.33 -0.3
193,278 + GFF4178 0.35 -1.3
193,279 - GFF4178 0.35 -0.9
193,390 - GFF4178 0.42 +0.6
193,390 - GFF4178 0.42 -1.1

Or see this region's nucleotide sequence