Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4169 and GFF4170 are separated by 110 nucleotides GFF4170 and GFF4171 are separated by 11 nucleotides GFF4171 and GFF4172 are separated by 41 nucleotides
GFF4169 - D-erythritol 1-phosphate dehydrogenase, at 182,643 to 184,151
GFF4169
GFF4170 - Dihydroanticapsin 7-dehydrogenase, at 184,262 to 185,017
GFF4170
GFF4171 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase, at 185,029 to 185,790
GFF4171
GFF4172 - Long-chain-fatty-acid--CoA ligase FadD13, at 185,832 to 187,451
GFF4172
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1 at 183.394 kb on + strand, within GFF4169 at 183.394 kb on + strand, within GFF4169 at 183.394 kb on + strand, within GFF4169 at 183.394 kb on + strand, within GFF4169 at 183.395 kb on - strand, within GFF4169 at 183.395 kb on - strand, within GFF4169 at 183.413 kb on - strand, within GFF4169 at 183.709 kb on + strand, within GFF4169 at 183.728 kb on - strand, within GFF4169 at 183.810 kb on - strand, within GFF4169 at 183.817 kb on + strand, within GFF4169 at 183.965 kb on - strand, within GFF4169 at 183.965 kb on - strand, within GFF4169 at 183.977 kb on - strand, within GFF4169 at 184.326 kb on + strand at 184.326 kb on + strand at 184.327 kb on - strand at 184.769 kb on + strand, within GFF4170 at 184.769 kb on + strand, within GFF4170 at 184.769 kb on + strand, within GFF4170 at 184.841 kb on - strand, within GFF4170 at 185.093 kb on + strand at 185.093 kb on + strand at 185.093 kb on + strand at 185.094 kb on - strand at 185.094 kb on - strand at 185.126 kb on - strand, within GFF4171 at 185.608 kb on - strand, within GFF4171
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 183,394 + GFF4169 0.50 -0.7 183,394 + GFF4169 0.50 +1.1 183,394 + GFF4169 0.50 -0.7 183,394 + GFF4169 0.50 +0.7 183,395 - GFF4169 0.50 +1.3 183,395 - GFF4169 0.50 +1.5 183,413 - GFF4169 0.51 +0.2 183,709 + GFF4169 0.71 -1.2 183,728 - GFF4169 0.72 +1.2 183,810 - GFF4169 0.77 +0.2 183,817 + GFF4169 0.78 -1.4 183,965 - GFF4169 0.88 +0.7 183,965 - GFF4169 0.88 +0.9 183,977 - GFF4169 0.88 -0.2 184,326 + +0.7 184,326 + +1.1 184,327 - +1.4 184,769 + GFF4170 0.67 -0.6 184,769 + GFF4170 0.67 +1.0 184,769 + GFF4170 0.67 +1.7 184,841 - GFF4170 0.77 +0.7 185,093 + +0.2 185,093 + +0.3 185,093 + -0.7 185,094 - +1.1 185,094 - -0.7 185,126 - GFF4171 0.13 -0.9 185,608 - GFF4171 0.76 +0.8
Or see this region's nucleotide sequence