Strain Fitness in Xanthobacter sp. DMC5 around GFF4110

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4109 and GFF4110 are separated by 385 nucleotidesGFF4110 and GFF4111 overlap by 4 nucleotides GFF4109 - hypothetical protein, at 100,852 to 103,365 GFF4109 GFF4110 - 3-oxo-isoapionate kinase, at 103,751 to 105,124 GFF4110 GFF4111 - 3-oxo-isoapionate-4-phosphate transcarboxylase/hydrolase, at 105,121 to 106,365 GFF4111 Position (kb) 103 104 105 106Strain fitness (log2 ratio) -1 0 1at 102.902 kb on + strand, within GFF4109at 103.022 kb on + strand, within GFF4109at 103.022 kb on + strand, within GFF4109at 103.022 kb on + strand, within GFF4109at 103.023 kb on - strand, within GFF4109at 103.023 kb on - strand, within GFF4109at 103.288 kb on - strandat 103.332 kb on + strandat 103.333 kb on - strandat 103.425 kb on - strandat 103.457 kb on + strandat 103.506 kb on - strandat 103.506 kb on - strandat 103.506 kb on - strandat 103.721 kb on + strandat 103.721 kb on + strandat 103.824 kb on + strandat 103.825 kb on - strandat 103.930 kb on + strand, within GFF4110at 103.931 kb on - strand, within GFF4110at 104.103 kb on + strand, within GFF4110at 104.358 kb on + strand, within GFF4110at 104.373 kb on + strand, within GFF4110at 104.374 kb on - strand, within GFF4110at 104.662 kb on - strand, within GFF4110at 104.835 kb on + strand, within GFF4110at 104.835 kb on + strand, within GFF4110at 104.836 kb on - strand, within GFF4110at 105.069 kb on + strandat 105.308 kb on + strand, within GFF4111at 105.308 kb on + strand, within GFF4111at 105.308 kb on + strand, within GFF4111at 105.308 kb on + strand, within GFF4111at 105.309 kb on - strand, within GFF4111at 105.309 kb on - strand, within GFF4111at 105.309 kb on - strand, within GFF4111at 105.446 kb on + strand, within GFF4111at 105.536 kb on + strand, within GFF4111at 105.897 kb on - strand, within GFF4111at 106.026 kb on + strand, within GFF4111at 106.027 kb on - strand, within GFF4111at 106.048 kb on + strand, within GFF4111at 106.049 kb on - strand, within GFF4111

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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102,902 + GFF4109 0.82 +0.8
103,022 + GFF4109 0.86 -0.7
103,022 + GFF4109 0.86 +0.0
103,022 + GFF4109 0.86 +0.8
103,023 - GFF4109 0.86 +0.9
103,023 - GFF4109 0.86 +0.8
103,288 - +0.1
103,332 + +0.1
103,333 - +0.0
103,425 - -1.0
103,457 + +0.1
103,506 - -0.9
103,506 - -0.3
103,506 - -0.4
103,721 + +0.6
103,721 + +0.6
103,824 + +0.1
103,825 - +0.7
103,930 + GFF4110 0.13 +0.5
103,931 - GFF4110 0.13 +0.1
104,103 + GFF4110 0.26 +0.0
104,358 + GFF4110 0.44 -1.2
104,373 + GFF4110 0.45 +0.3
104,374 - GFF4110 0.45 +0.7
104,662 - GFF4110 0.66 +0.3
104,835 + GFF4110 0.79 -0.3
104,835 + GFF4110 0.79 -0.4
104,836 - GFF4110 0.79 +0.7
105,069 + +0.3
105,308 + GFF4111 0.15 +0.5
105,308 + GFF4111 0.15 +0.2
105,308 + GFF4111 0.15 -1.0
105,308 + GFF4111 0.15 -0.7
105,309 - GFF4111 0.15 -1.0
105,309 - GFF4111 0.15 +0.1
105,309 - GFF4111 0.15 +0.1
105,446 + GFF4111 0.26 -0.5
105,536 + GFF4111 0.33 +0.1
105,897 - GFF4111 0.62 -0.9
106,026 + GFF4111 0.73 -0.1
106,027 - GFF4111 0.73 -1.4
106,048 + GFF4111 0.74 -0.3
106,049 - GFF4111 0.75 +1.1

Or see this region's nucleotide sequence