Strain Fitness in Xanthobacter sp. DMC5 around GFF4109

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4107 and GFF4108 are separated by 11 nucleotidesGFF4108 and GFF4109 are separated by 67 nucleotidesGFF4109 and GFF4110 are separated by 385 nucleotides GFF4107 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 99,226 to 100,446 GFF4107 GFF4108 - hypothetical protein, at 100,458 to 100,784 GFF4108 GFF4109 - hypothetical protein, at 100,852 to 103,365 GFF4109 GFF4110 - 3-oxo-isoapionate kinase, at 103,751 to 105,124 GFF4110 Position (kb) 100 101 102 103 104Strain fitness (log2 ratio) -2 -1 0 1 2at 99.877 kb on + strand, within GFF4107at 99.943 kb on + strand, within GFF4107at 99.955 kb on + strand, within GFF4107at 99.955 kb on + strand, within GFF4107at 99.955 kb on + strand, within GFF4107at 99.956 kb on - strand, within GFF4107at 99.956 kb on - strand, within GFF4107at 100.028 kb on - strand, within GFF4107at 100.028 kb on - strand, within GFF4107at 100.280 kb on - strand, within GFF4107at 100.402 kb on + strandat 100.402 kb on + strandat 100.402 kb on + strandat 100.403 kb on - strandat 100.403 kb on - strandat 100.403 kb on - strandat 100.404 kb on + strandat 100.431 kb on + strandat 100.501 kb on + strand, within GFF4108at 100.502 kb on - strand, within GFF4108at 100.502 kb on - strand, within GFF4108at 100.502 kb on - strand, within GFF4108at 100.502 kb on - strand, within GFF4108at 100.502 kb on - strand, within GFF4108at 100.557 kb on + strand, within GFF4108at 100.557 kb on + strand, within GFF4108at 100.557 kb on + strand, within GFF4108at 100.557 kb on + strand, within GFF4108at 100.558 kb on - strand, within GFF4108at 100.558 kb on - strand, within GFF4108at 100.558 kb on - strand, within GFF4108at 100.558 kb on - strand, within GFF4108at 100.558 kb on - strand, within GFF4108at 100.647 kb on + strand, within GFF4108at 100.647 kb on + strand, within GFF4108at 100.648 kb on - strand, within GFF4108at 100.648 kb on - strand, within GFF4108at 100.779 kb on + strandat 100.779 kb on + strandat 100.779 kb on + strandat 100.780 kb on - strandat 100.780 kb on - strandat 100.782 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.853 kb on + strandat 100.854 kb on - strandat 100.854 kb on - strandat 101.297 kb on + strand, within GFF4109at 101.297 kb on + strand, within GFF4109at 101.298 kb on - strand, within GFF4109at 101.298 kb on - strand, within GFF4109at 101.447 kb on + strand, within GFF4109at 101.448 kb on - strand, within GFF4109at 101.633 kb on + strand, within GFF4109at 101.633 kb on + strand, within GFF4109at 101.633 kb on + strand, within GFF4109at 101.634 kb on - strand, within GFF4109at 101.634 kb on - strand, within GFF4109at 101.634 kb on - strand, within GFF4109at 101.738 kb on + strand, within GFF4109at 101.738 kb on + strand, within GFF4109at 101.738 kb on + strand, within GFF4109at 101.739 kb on - strand, within GFF4109at 101.739 kb on - strand, within GFF4109at 101.739 kb on - strand, within GFF4109at 101.817 kb on + strand, within GFF4109at 101.818 kb on - strand, within GFF4109at 101.818 kb on - strand, within GFF4109at 101.818 kb on - strand, within GFF4109at 101.818 kb on - strand, within GFF4109at 101.819 kb on + strand, within GFF4109at 101.819 kb on + strand, within GFF4109at 101.819 kb on + strand, within GFF4109at 102.035 kb on + strand, within GFF4109at 102.080 kb on + strand, within GFF4109at 102.080 kb on + strand, within GFF4109at 102.107 kb on + strand, within GFF4109at 102.107 kb on + strand, within GFF4109at 102.108 kb on - strand, within GFF4109at 102.108 kb on - strand, within GFF4109at 102.152 kb on + strand, within GFF4109at 102.152 kb on + strand, within GFF4109at 102.153 kb on - strand, within GFF4109at 102.153 kb on - strand, within GFF4109at 102.216 kb on + strand, within GFF4109at 102.218 kb on + strand, within GFF4109at 102.218 kb on + strand, within GFF4109at 102.218 kb on + strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.219 kb on - strand, within GFF4109at 102.293 kb on + strand, within GFF4109at 102.293 kb on + strand, within GFF4109at 102.294 kb on - strand, within GFF4109at 102.303 kb on - strand, within GFF4109at 102.303 kb on - strand, within GFF4109at 102.311 kb on + strand, within GFF4109at 102.554 kb on + strand, within GFF4109at 102.554 kb on + strand, within GFF4109at 102.554 kb on + strand, within GFF4109at 102.555 kb on - strand, within GFF4109at 102.603 kb on + strand, within GFF4109at 102.604 kb on - strand, within GFF4109at 102.605 kb on + strand, within GFF4109at 102.605 kb on + strand, within GFF4109at 102.605 kb on + strand, within GFF4109at 102.605 kb on + strand, within GFF4109at 102.606 kb on - strand, within GFF4109at 102.662 kb on + strand, within GFF4109at 102.663 kb on - strand, within GFF4109at 102.681 kb on + strand, within GFF4109at 102.681 kb on + strand, within GFF4109at 102.682 kb on - strand, within GFF4109at 102.743 kb on + strand, within GFF4109at 102.743 kb on + strand, within GFF4109at 102.902 kb on + strand, within GFF4109at 103.022 kb on + strand, within GFF4109at 103.022 kb on + strand, within GFF4109at 103.022 kb on + strand, within GFF4109at 103.023 kb on - strand, within GFF4109at 103.023 kb on - strand, within GFF4109at 103.288 kb on - strandat 103.332 kb on + strandat 103.333 kb on - strandat 103.425 kb on - strandat 103.457 kb on + strandat 103.506 kb on - strandat 103.506 kb on - strandat 103.506 kb on - strandat 103.721 kb on + strandat 103.721 kb on + strandat 103.824 kb on + strandat 103.825 kb on - strandat 103.930 kb on + strand, within GFF4110at 103.931 kb on - strand, within GFF4110at 104.103 kb on + strand, within GFF4110at 104.358 kb on + strand, within GFF4110

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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99,877 + GFF4107 0.53 -0.3
99,943 + GFF4107 0.59 +1.4
99,955 + GFF4107 0.60 -1.0
99,955 + GFF4107 0.60 -0.2
99,955 + GFF4107 0.60 -0.0
99,956 - GFF4107 0.60 +0.4
99,956 - GFF4107 0.60 +0.0
100,028 - GFF4107 0.66 -0.9
100,028 - GFF4107 0.66 +0.1
100,280 - GFF4107 0.86 +0.2
100,402 + +1.3
100,402 + -0.8
100,402 + -1.0
100,403 - -0.5
100,403 - +0.5
100,403 - +0.1
100,404 + -0.3
100,431 + +0.8
100,501 + GFF4108 0.13 +0.3
100,502 - GFF4108 0.13 -0.9
100,502 - GFF4108 0.13 -0.1
100,502 - GFF4108 0.13 +1.1
100,502 - GFF4108 0.13 +0.4
100,502 - GFF4108 0.13 -0.1
100,557 + GFF4108 0.30 +1.2
100,557 + GFF4108 0.30 -0.5
100,557 + GFF4108 0.30 +0.9
100,557 + GFF4108 0.30 -0.6
100,558 - GFF4108 0.31 -0.1
100,558 - GFF4108 0.31 -1.9
100,558 - GFF4108 0.31 +0.1
100,558 - GFF4108 0.31 -1.3
100,558 - GFF4108 0.31 -0.7
100,647 + GFF4108 0.58 -0.4
100,647 + GFF4108 0.58 +0.3
100,648 - GFF4108 0.58 +0.3
100,648 - GFF4108 0.58 -0.5
100,779 + +0.4
100,779 + +0.3
100,779 + +0.2
100,780 - +0.4
100,780 - +0.8
100,782 + +0.6
100,853 + -0.1
100,853 + -0.2
100,853 + +1.9
100,854 - -0.2
100,854 - -1.2
101,297 + GFF4109 0.18 -0.0
101,297 + GFF4109 0.18 -0.7
101,298 - GFF4109 0.18 +0.6
101,298 - GFF4109 0.18 -0.1
101,447 + GFF4109 0.24 +1.7
101,448 - GFF4109 0.24 +1.9
101,633 + GFF4109 0.31 +0.8
101,633 + GFF4109 0.31 -0.8
101,633 + GFF4109 0.31 +0.5
101,634 - GFF4109 0.31 +0.5
101,634 - GFF4109 0.31 +0.3
101,634 - GFF4109 0.31 -0.6
101,738 + GFF4109 0.35 +1.0
101,738 + GFF4109 0.35 -1.1
101,738 + GFF4109 0.35 -0.0
101,739 - GFF4109 0.35 -0.2
101,739 - GFF4109 0.35 -1.5
101,739 - GFF4109 0.35 +0.5
101,817 + GFF4109 0.38 -0.3
101,818 - GFF4109 0.38 +0.5
101,818 - GFF4109 0.38 -0.2
101,818 - GFF4109 0.38 +0.2
101,818 - GFF4109 0.38 -1.2
101,819 + GFF4109 0.38 -0.2
101,819 + GFF4109 0.38 +0.0
101,819 + GFF4109 0.38 -0.6
102,035 + GFF4109 0.47 +0.5
102,080 + GFF4109 0.49 +0.3
102,080 + GFF4109 0.49 -0.7
102,107 + GFF4109 0.50 +0.4
102,107 + GFF4109 0.50 +0.1
102,108 - GFF4109 0.50 -0.2
102,108 - GFF4109 0.50 +0.3
102,152 + GFF4109 0.52 -0.5
102,152 + GFF4109 0.52 +0.1
102,153 - GFF4109 0.52 +0.6
102,153 - GFF4109 0.52 -0.1
102,216 + GFF4109 0.54 -0.1
102,218 + GFF4109 0.54 +0.9
102,218 + GFF4109 0.54 -0.4
102,218 + GFF4109 0.54 +0.6
102,219 - GFF4109 0.54 -0.3
102,219 - GFF4109 0.54 -0.6
102,219 - GFF4109 0.54 -1.5
102,219 - GFF4109 0.54 -1.0
102,219 - GFF4109 0.54 +0.9
102,219 - GFF4109 0.54 +0.3
102,219 - GFF4109 0.54 +0.9
102,219 - GFF4109 0.54 -0.1
102,219 - GFF4109 0.54 +0.0
102,219 - GFF4109 0.54 -1.1
102,219 - GFF4109 0.54 +0.5
102,219 - GFF4109 0.54 -0.2
102,293 + GFF4109 0.57 +0.4
102,293 + GFF4109 0.57 -0.3
102,294 - GFF4109 0.57 -0.5
102,303 - GFF4109 0.58 -1.4
102,303 - GFF4109 0.58 +1.1
102,311 + GFF4109 0.58 -0.4
102,554 + GFF4109 0.68 -0.6
102,554 + GFF4109 0.68 +0.5
102,554 + GFF4109 0.68 -1.4
102,555 - GFF4109 0.68 +0.1
102,603 + GFF4109 0.70 -0.1
102,604 - GFF4109 0.70 -0.1
102,605 + GFF4109 0.70 +0.3
102,605 + GFF4109 0.70 +0.2
102,605 + GFF4109 0.70 +1.1
102,605 + GFF4109 0.70 -0.7
102,606 - GFF4109 0.70 -0.6
102,662 + GFF4109 0.72 +1.3
102,663 - GFF4109 0.72 -1.4
102,681 + GFF4109 0.73 +0.3
102,681 + GFF4109 0.73 -0.5
102,682 - GFF4109 0.73 -0.2
102,743 + GFF4109 0.75 +0.8
102,743 + GFF4109 0.75 +1.4
102,902 + GFF4109 0.82 +0.8
103,022 + GFF4109 0.86 -0.7
103,022 + GFF4109 0.86 +0.0
103,022 + GFF4109 0.86 +0.8
103,023 - GFF4109 0.86 +0.9
103,023 - GFF4109 0.86 +0.8
103,288 - +0.1
103,332 + +0.1
103,333 - +0.0
103,425 - -1.0
103,457 + +0.1
103,506 - -0.9
103,506 - -0.3
103,506 - -0.4
103,721 + +0.6
103,721 + +0.6
103,824 + +0.1
103,825 - +0.7
103,930 + GFF4110 0.13 +0.5
103,931 - GFF4110 0.13 +0.1
104,103 + GFF4110 0.26 +0.0
104,358 + GFF4110 0.44 -1.2

Or see this region's nucleotide sequence