Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4088 and GFF4089 are separated by 130 nucleotides GFF4089 and GFF4090 are separated by 23 nucleotides GFF4090 and GFF4091 are separated by 19 nucleotides
GFF4088 - Nodulation protein D 2, at 80,444 to 81,376
GFF4088
GFF4089 - Riboflavin transporter RibZ, at 81,507 to 82,949
GFF4089
GFF4090 - Vibriobactin utilization protein ViuB, at 82,973 to 83,746
GFF4090
GFF4091 - hypothetical protein, at 83,766 to 84,599
GFF4091
Position (kb) 81
82
83 Strain fitness (log2 ratio) -2
-1
0
1
2 at 81.413 kb on + strand at 81.434 kb on + strand at 81.456 kb on - strand at 81.506 kb on + strand at 81.711 kb on + strand, within GFF4089 at 81.711 kb on + strand, within GFF4089 at 81.711 kb on + strand, within GFF4089 at 81.712 kb on - strand, within GFF4089 at 81.712 kb on - strand, within GFF4089 at 81.783 kb on + strand, within GFF4089 at 81.784 kb on - strand, within GFF4089 at 81.784 kb on - strand, within GFF4089 at 82.101 kb on + strand, within GFF4089 at 82.101 kb on + strand, within GFF4089 at 82.389 kb on + strand, within GFF4089 at 82.389 kb on + strand, within GFF4089 at 82.390 kb on - strand, within GFF4089 at 82.635 kb on + strand, within GFF4089 at 82.635 kb on + strand, within GFF4089 at 82.635 kb on + strand, within GFF4089 at 82.636 kb on - strand, within GFF4089 at 82.636 kb on - strand, within GFF4089 at 82.636 kb on - strand, within GFF4089 at 82.636 kb on - strand, within GFF4089 at 82.636 kb on - strand, within GFF4089 at 83.195 kb on + strand, within GFF4090 at 83.235 kb on - strand, within GFF4090
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 81,413 + +0.5 81,434 + +0.5 81,456 - -0.3 81,506 + -1.3 81,711 + GFF4089 0.14 +0.4 81,711 + GFF4089 0.14 +1.2 81,711 + GFF4089 0.14 -1.3 81,712 - GFF4089 0.14 -0.1 81,712 - GFF4089 0.14 -0.3 81,783 + GFF4089 0.19 +0.2 81,784 - GFF4089 0.19 -1.2 81,784 - GFF4089 0.19 +0.4 82,101 + GFF4089 0.41 +0.3 82,101 + GFF4089 0.41 +0.1 82,389 + GFF4089 0.61 +0.5 82,389 + GFF4089 0.61 -1.8 82,390 - GFF4089 0.61 +1.5 82,635 + GFF4089 0.78 +2.1 82,635 + GFF4089 0.78 -0.2 82,635 + GFF4089 0.78 -0.9 82,636 - GFF4089 0.78 -1.0 82,636 - GFF4089 0.78 +0.6 82,636 - GFF4089 0.78 +0.5 82,636 - GFF4089 0.78 +0.5 82,636 - GFF4089 0.78 +0.2 83,195 + GFF4090 0.29 -0.1 83,235 - GFF4090 0.34 -0.4
Or see this region's nucleotide sequence