Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4083 and GFF4084 are separated by 84 nucleotides GFF4084 and GFF4085 are separated by 9 nucleotides GFF4085 and GFF4086 overlap by 4 nucleotides
GFF4083 - hypothetical protein, at 75,585 to 76,688
GFF4083
GFF4084 - Nitrate import ATP-binding protein NrtD, at 76,773 to 77,564
GFF4084
GFF4085 - Bicarbonate transport system permease protein CmpB, at 77,574 to 78,356
GFF4085
GFF4086 - hypothetical protein, at 78,353 to 79,138
GFF4086
Position (kb) 77
78
79 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 76.873 kb on + strand, within GFF4084 at 76.874 kb on - strand, within GFF4084 at 76.972 kb on + strand, within GFF4084 at 76.972 kb on + strand, within GFF4084 at 76.973 kb on - strand, within GFF4084 at 76.973 kb on - strand, within GFF4084 at 76.973 kb on - strand, within GFF4084 at 76.973 kb on - strand, within GFF4084 at 76.973 kb on - strand, within GFF4084 at 77.125 kb on + strand, within GFF4084 at 77.126 kb on - strand, within GFF4084 at 77.180 kb on - strand, within GFF4084 at 77.717 kb on - strand, within GFF4085 at 77.717 kb on - strand, within GFF4085 at 77.717 kb on - strand, within GFF4085 at 77.884 kb on + strand, within GFF4085 at 77.884 kb on + strand, within GFF4085 at 77.885 kb on - strand, within GFF4085 at 77.915 kb on - strand, within GFF4085 at 78.127 kb on + strand, within GFF4085 at 78.127 kb on + strand, within GFF4085 at 78.128 kb on - strand, within GFF4085 at 78.128 kb on - strand, within GFF4085 at 78.477 kb on + strand, within GFF4086 at 78.742 kb on - strand, within GFF4086 at 78.979 kb on - strand, within GFF4086 at 79.015 kb on + strand, within GFF4086 at 79.235 kb on + strand at 79.308 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 76,873 + GFF4084 0.13 -0.1 76,874 - GFF4084 0.13 +1.2 76,972 + GFF4084 0.25 +0.2 76,972 + GFF4084 0.25 -0.3 76,973 - GFF4084 0.25 +0.4 76,973 - GFF4084 0.25 -1.4 76,973 - GFF4084 0.25 +0.7 76,973 - GFF4084 0.25 -0.3 76,973 - GFF4084 0.25 -0.2 77,125 + GFF4084 0.44 -0.1 77,126 - GFF4084 0.45 +1.1 77,180 - GFF4084 0.51 +0.4 77,717 - GFF4085 0.18 -0.3 77,717 - GFF4085 0.18 -0.6 77,717 - GFF4085 0.18 -0.3 77,884 + GFF4085 0.40 +0.3 77,884 + GFF4085 0.40 +1.9 77,885 - GFF4085 0.40 +1.1 77,915 - GFF4085 0.44 -0.4 78,127 + GFF4085 0.71 -3.4 78,127 + GFF4085 0.71 +0.5 78,128 - GFF4085 0.71 +0.2 78,128 - GFF4085 0.71 -2.1 78,477 + GFF4086 0.16 +1.4 78,742 - GFF4086 0.49 -0.0 78,979 - GFF4086 0.80 -0.6 79,015 + GFF4086 0.84 -0.8 79,235 + -0.0 79,308 - +1.1
Or see this region's nucleotide sequence