Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4052 and GFF4053 are separated by 273 nucleotides GFF4053 and GFF4054 are separated by 2 nucleotides
GFF4052 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 36,040 to 36,939
GFF4052
GFF4053 - Protein YdeP, at 37,213 to 39,510
GFF4053
GFF4054 - Cytochrome bd-II ubiquinol oxidase subunit 1, at 39,513 to 40,931
GFF4054
Position (kb) 37
38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2 at 36.317 kb on - strand, within GFF4052 at 36.481 kb on + strand, within GFF4052 at 36.482 kb on - strand, within GFF4052 at 36.559 kb on + strand, within GFF4052 at 36.559 kb on + strand, within GFF4052 at 36.560 kb on - strand, within GFF4052 at 36.560 kb on - strand, within GFF4052 at 36.593 kb on - strand, within GFF4052 at 36.722 kb on - strand, within GFF4052 at 36.937 kb on + strand at 36.937 kb on + strand at 36.938 kb on - strand at 36.988 kb on - strand at 37.058 kb on + strand at 37.059 kb on - strand at 37.071 kb on + strand at 37.086 kb on + strand at 37.087 kb on - strand at 37.129 kb on + strand at 37.130 kb on - strand at 37.240 kb on + strand at 37.488 kb on + strand, within GFF4053 at 37.489 kb on - strand, within GFF4053 at 37.520 kb on - strand, within GFF4053 at 37.561 kb on + strand, within GFF4053 at 37.561 kb on + strand, within GFF4053 at 37.583 kb on - strand, within GFF4053 at 37.667 kb on - strand, within GFF4053 at 37.667 kb on - strand, within GFF4053 at 38.076 kb on + strand, within GFF4053 at 38.076 kb on + strand, within GFF4053 at 38.085 kb on + strand, within GFF4053 at 38.085 kb on + strand, within GFF4053 at 38.085 kb on + strand, within GFF4053 at 38.085 kb on + strand, within GFF4053 at 38.086 kb on - strand, within GFF4053 at 38.086 kb on - strand, within GFF4053 at 38.281 kb on + strand, within GFF4053 at 38.282 kb on - strand, within GFF4053 at 38.282 kb on - strand, within GFF4053 at 38.282 kb on - strand, within GFF4053 at 38.311 kb on + strand, within GFF4053 at 38.311 kb on + strand, within GFF4053 at 38.567 kb on + strand, within GFF4053 at 38.683 kb on - strand, within GFF4053 at 38.683 kb on - strand, within GFF4053 at 38.683 kb on - strand, within GFF4053 at 38.683 kb on - strand, within GFF4053 at 38.881 kb on - strand, within GFF4053 at 38.950 kb on + strand, within GFF4053 at 38.951 kb on - strand, within GFF4053 at 38.951 kb on - strand, within GFF4053 at 38.952 kb on + strand, within GFF4053 at 38.952 kb on + strand, within GFF4053 at 38.952 kb on + strand, within GFF4053 at 38.952 kb on + strand, within GFF4053 at 38.952 kb on + strand, within GFF4053 at 38.952 kb on + strand, within GFF4053 at 38.953 kb on - strand, within GFF4053 at 38.953 kb on - strand, within GFF4053 at 38.953 kb on - strand, within GFF4053 at 39.001 kb on + strand, within GFF4053 at 39.175 kb on + strand, within GFF4053 at 39.175 kb on + strand, within GFF4053 at 39.190 kb on + strand, within GFF4053 at 39.257 kb on - strand, within GFF4053 at 39.388 kb on + strand at 39.389 kb on - strand at 39.392 kb on - strand at 39.392 kb on - strand at 39.421 kb on + strand at 39.421 kb on + strand at 39.651 kb on + strand at 39.732 kb on + strand, within GFF4054 at 39.801 kb on + strand, within GFF4054 at 40.002 kb on + strand, within GFF4054 at 40.002 kb on + strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.003 kb on - strand, within GFF4054 at 40.384 kb on + strand, within GFF4054 at 40.384 kb on + strand, within GFF4054 at 40.385 kb on - strand, within GFF4054 at 40.385 kb on - strand, within GFF4054 at 40.385 kb on - strand, within GFF4054 at 40.386 kb on + strand, within GFF4054 at 40.386 kb on + strand, within GFF4054
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 36,317 - GFF4052 0.31 +0.7 36,481 + GFF4052 0.49 +0.2 36,482 - GFF4052 0.49 -0.0 36,559 + GFF4052 0.58 +0.8 36,559 + GFF4052 0.58 +0.5 36,560 - GFF4052 0.58 -1.3 36,560 - GFF4052 0.58 +0.1 36,593 - GFF4052 0.61 -0.2 36,722 - GFF4052 0.76 +0.5 36,937 + -0.1 36,937 + -0.7 36,938 - +0.7 36,988 - -0.8 37,058 + -1.1 37,059 - +0.0 37,071 + -0.5 37,086 + +1.5 37,087 - -0.5 37,129 + -0.8 37,130 - +0.2 37,240 + +0.2 37,488 + GFF4053 0.12 +0.4 37,489 - GFF4053 0.12 +0.9 37,520 - GFF4053 0.13 -0.7 37,561 + GFF4053 0.15 +0.6 37,561 + GFF4053 0.15 -0.1 37,583 - GFF4053 0.16 +0.3 37,667 - GFF4053 0.20 +0.6 37,667 - GFF4053 0.20 -0.5 38,076 + GFF4053 0.38 -1.1 38,076 + GFF4053 0.38 -0.5 38,085 + GFF4053 0.38 -0.5 38,085 + GFF4053 0.38 -0.2 38,085 + GFF4053 0.38 +1.1 38,085 + GFF4053 0.38 +1.0 38,086 - GFF4053 0.38 -0.7 38,086 - GFF4053 0.38 +0.4 38,281 + GFF4053 0.46 -1.2 38,282 - GFF4053 0.47 -1.3 38,282 - GFF4053 0.47 +0.3 38,282 - GFF4053 0.47 +0.2 38,311 + GFF4053 0.48 +1.8 38,311 + GFF4053 0.48 -0.0 38,567 + GFF4053 0.59 +0.4 38,683 - GFF4053 0.64 +0.8 38,683 - GFF4053 0.64 +0.0 38,683 - GFF4053 0.64 -0.7 38,683 - GFF4053 0.64 +0.1 38,881 - GFF4053 0.73 -1.0 38,950 + GFF4053 0.76 -1.6 38,951 - GFF4053 0.76 -0.0 38,951 - GFF4053 0.76 -0.2 38,952 + GFF4053 0.76 -0.4 38,952 + GFF4053 0.76 +0.3 38,952 + GFF4053 0.76 +0.4 38,952 + GFF4053 0.76 +0.3 38,952 + GFF4053 0.76 +0.3 38,952 + GFF4053 0.76 +0.2 38,953 - GFF4053 0.76 +0.1 38,953 - GFF4053 0.76 +1.0 38,953 - GFF4053 0.76 -0.1 39,001 + GFF4053 0.78 +0.4 39,175 + GFF4053 0.85 +1.5 39,175 + GFF4053 0.85 +0.0 39,190 + GFF4053 0.86 +0.1 39,257 - GFF4053 0.89 -0.7 39,388 + -1.2 39,389 - -0.3 39,392 - -1.1 39,392 - -0.5 39,421 + -0.2 39,421 + +0.2 39,651 + +0.6 39,732 + GFF4054 0.15 +0.9 39,801 + GFF4054 0.20 +0.0 40,002 + GFF4054 0.34 -0.7 40,002 + GFF4054 0.34 -0.5 40,003 - GFF4054 0.35 -0.4 40,003 - GFF4054 0.35 -0.5 40,003 - GFF4054 0.35 +1.1 40,003 - GFF4054 0.35 +0.3 40,003 - GFF4054 0.35 +0.7 40,003 - GFF4054 0.35 -1.1 40,003 - GFF4054 0.35 +1.0 40,384 + GFF4054 0.61 -2.1 40,384 + GFF4054 0.61 -0.6 40,385 - GFF4054 0.61 -0.6 40,385 - GFF4054 0.61 +1.8 40,385 - GFF4054 0.61 +0.5 40,386 + GFF4054 0.62 -1.1 40,386 + GFF4054 0.62 -0.1
Or see this region's nucleotide sequence