Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4006 and GFF4007 are separated by 58 nucleotides GFF4007 and GFF4008 are separated by 3 nucleotides
GFF4006 - 5-aminolevulinate synthase, at 381,242 to 382,525
GFF4006
GFF4007 - 3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA, at 382,584 to 383,408
GFF4007
GFF4008 - Vitamin B12 import ATP-binding protein BtuD, at 383,412 to 384,452
GFF4008
Position (kb) 382
383
384 Strain fitness (log2 ratio) -1
0
1 at 382.439 kb on + strand at 382.440 kb on - strand at 382.440 kb on - strand at 382.440 kb on - strand at 383.044 kb on + strand, within GFF4007 at 383.095 kb on + strand, within GFF4007 at 383.095 kb on + strand, within GFF4007 at 383.095 kb on + strand, within GFF4007 at 383.425 kb on + strand at 383.746 kb on + strand, within GFF4008 at 383.746 kb on + strand, within GFF4008 at 383.746 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.767 kb on + strand, within GFF4008 at 383.768 kb on - strand, within GFF4008 at 383.768 kb on - strand, within GFF4008 at 383.866 kb on + strand, within GFF4008 at 383.866 kb on + strand, within GFF4008 at 383.866 kb on + strand, within GFF4008 at 383.867 kb on - strand, within GFF4008 at 383.867 kb on - strand, within GFF4008 at 384.182 kb on - strand, within GFF4008
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 382,439 + -0.2 382,440 - +0.7 382,440 - +0.6 382,440 - +0.1 383,044 + GFF4007 0.56 +1.1 383,095 + GFF4007 0.62 -0.4 383,095 + GFF4007 0.62 -0.0 383,095 + GFF4007 0.62 -0.0 383,425 + +0.8 383,746 + GFF4008 0.32 -0.1 383,746 + GFF4008 0.32 -0.5 383,746 + GFF4008 0.32 +0.3 383,767 + GFF4008 0.34 -0.7 383,767 + GFF4008 0.34 +0.6 383,767 + GFF4008 0.34 +1.3 383,767 + GFF4008 0.34 +1.3 383,768 - GFF4008 0.34 -0.4 383,768 - GFF4008 0.34 +0.1 383,866 + GFF4008 0.44 -0.2 383,866 + GFF4008 0.44 +0.2 383,866 + GFF4008 0.44 +0.7 383,867 - GFF4008 0.44 +0.5 383,867 - GFF4008 0.44 +0.4 384,182 - GFF4008 0.74 -0.4
Or see this region's nucleotide sequence