Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3979 and GFF3980 are separated by 82 nucleotides GFF3980 and GFF3981 overlap by 32 nucleotides GFF3981 and GFF3982 are separated by 54 nucleotides
GFF3979 - hypothetical protein, at 346,697 to 347,764
GFF3979
GFF3980 - HTH-type transcriptional regulator HdfR, at 347,847 to 348,791
GFF3980
GFF3981 - putative ABC transporter ATP-binding protein YheS, at 348,760 to 350,637
GFF3981
GFF3982 - Ubiquinone hydroxylase UbiL, at 350,692 to 352,011
GFF3982
Position (kb) 348
349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2 at 349.097 kb on + strand, within GFF3981 at 349.118 kb on + strand, within GFF3981 at 349.118 kb on + strand, within GFF3981 at 349.118 kb on + strand, within GFF3981 at 349.118 kb on + strand, within GFF3981 at 349.118 kb on + strand, within GFF3981 at 349.506 kb on - strand, within GFF3981 at 349.680 kb on - strand, within GFF3981 at 349.680 kb on - strand, within GFF3981 at 349.967 kb on + strand, within GFF3981 at 350.075 kb on + strand, within GFF3981 at 350.076 kb on - strand, within GFF3981 at 350.076 kb on - strand, within GFF3981 at 350.111 kb on + strand, within GFF3981 at 350.112 kb on - strand, within GFF3981 at 350.112 kb on - strand, within GFF3981 at 350.112 kb on - strand, within GFF3981 at 350.307 kb on - strand, within GFF3981 at 350.619 kb on + strand at 350.619 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 349,097 + GFF3981 0.18 +0.8 349,118 + GFF3981 0.19 -2.5 349,118 + GFF3981 0.19 +0.9 349,118 + GFF3981 0.19 -1.5 349,118 + GFF3981 0.19 +0.1 349,118 + GFF3981 0.19 -1.2 349,506 - GFF3981 0.40 -1.2 349,680 - GFF3981 0.49 +0.7 349,680 - GFF3981 0.49 -0.1 349,967 + GFF3981 0.64 +0.6 350,075 + GFF3981 0.70 +0.3 350,076 - GFF3981 0.70 +0.6 350,076 - GFF3981 0.70 +1.0 350,111 + GFF3981 0.72 +0.4 350,112 - GFF3981 0.72 +0.5 350,112 - GFF3981 0.72 +2.1 350,112 - GFF3981 0.72 -1.0 350,307 - GFF3981 0.82 -0.1 350,619 + -0.2 350,619 + -1.9
Or see this region's nucleotide sequence