Strain Fitness in Xanthobacter sp. DMC5 around GFF3974

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3973 and GFF3974 are separated by 5 nucleotidesGFF3974 and GFF3975 are separated by 7 nucleotides GFF3973 - hypothetical protein, at 341,344 to 342,777 GFF3973 GFF3974 - hypothetical protein, at 342,783 to 343,748 GFF3974 GFF3975 - Nitrate import ATP-binding protein NrtD, at 343,756 to 344,631 GFF3975 Position (kb) 342 343 344Strain fitness (log2 ratio) -1 0 1 2at 341.881 kb on + strand, within GFF3973at 342.100 kb on + strand, within GFF3973at 342.101 kb on - strand, within GFF3973at 342.203 kb on - strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.349 kb on + strand, within GFF3973at 342.350 kb on - strand, within GFF3973at 342.365 kb on - strand, within GFF3973at 342.385 kb on + strand, within GFF3973at 342.385 kb on + strand, within GFF3973at 342.511 kb on + strand, within GFF3973at 342.511 kb on + strand, within GFF3973at 342.511 kb on + strand, within GFF3973at 342.512 kb on - strand, within GFF3973at 342.512 kb on - strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.583 kb on + strand, within GFF3973at 342.584 kb on - strand, within GFF3973at 342.584 kb on - strand, within GFF3973at 342.584 kb on - strand, within GFF3973at 342.634 kb on + strandat 342.634 kb on + strandat 342.634 kb on + strandat 342.634 kb on + strandat 342.635 kb on - strandat 342.635 kb on - strandat 342.635 kb on - strandat 342.635 kb on - strandat 342.635 kb on - strandat 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.074 kb on + strand, within GFF3974at 343.075 kb on - strand, within GFF3974at 343.075 kb on - strand, within GFF3974at 343.075 kb on - strand, within GFF3974at 343.164 kb on + strand, within GFF3974at 343.164 kb on + strand, within GFF3974at 343.165 kb on - strand, within GFF3974at 343.165 kb on - strand, within GFF3974at 343.494 kb on + strand, within GFF3974at 343.495 kb on - strand, within GFF3974at 343.541 kb on + strand, within GFF3974at 343.605 kb on + strand, within GFF3974at 343.605 kb on + strand, within GFF3974at 343.623 kb on + strand, within GFF3974at 343.624 kb on - strand, within GFF3974at 343.638 kb on + strand, within GFF3974at 343.639 kb on - strand, within GFF3974at 343.822 kb on + strandat 344.038 kb on + strand, within GFF3975at 344.038 kb on + strand, within GFF3975at 344.176 kb on + strand, within GFF3975at 344.401 kb on + strand, within GFF3975at 344.402 kb on - strand, within GFF3975at 344.402 kb on - strand, within GFF3975

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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341,881 + GFF3973 0.37 +1.7
342,100 + GFF3973 0.53 +0.0
342,101 - GFF3973 0.53 +2.0
342,203 - GFF3973 0.60 -0.4
342,349 + GFF3973 0.70 +0.6
342,349 + GFF3973 0.70 +0.3
342,349 + GFF3973 0.70 +1.0
342,349 + GFF3973 0.70 -0.7
342,349 + GFF3973 0.70 +0.2
342,349 + GFF3973 0.70 +0.5
342,350 - GFF3973 0.70 +0.1
342,365 - GFF3973 0.71 -0.4
342,385 + GFF3973 0.73 -0.8
342,385 + GFF3973 0.73 +0.6
342,511 + GFF3973 0.81 +0.4
342,511 + GFF3973 0.81 +0.9
342,511 + GFF3973 0.81 -1.3
342,512 - GFF3973 0.81 -0.2
342,512 - GFF3973 0.81 +0.2
342,583 + GFF3973 0.86 -0.4
342,583 + GFF3973 0.86 -0.7
342,583 + GFF3973 0.86 -0.2
342,583 + GFF3973 0.86 -0.5
342,583 + GFF3973 0.86 -0.9
342,583 + GFF3973 0.86 -0.5
342,583 + GFF3973 0.86 -0.1
342,583 + GFF3973 0.86 -0.5
342,583 + GFF3973 0.86 +0.1
342,584 - GFF3973 0.86 -0.2
342,584 - GFF3973 0.86 +0.8
342,584 - GFF3973 0.86 -0.1
342,634 + +1.3
342,634 + +0.3
342,634 + -0.2
342,634 + +0.3
342,635 - -0.1
342,635 - +0.3
342,635 - +0.7
342,635 - +0.2
342,635 - -0.5
343,074 + GFF3974 0.30 -0.4
343,074 + GFF3974 0.30 -0.1
343,074 + GFF3974 0.30 -1.1
343,074 + GFF3974 0.30 +0.8
343,074 + GFF3974 0.30 -0.8
343,075 - GFF3974 0.30 +0.9
343,075 - GFF3974 0.30 -0.2
343,075 - GFF3974 0.30 -1.3
343,164 + GFF3974 0.39 -0.2
343,164 + GFF3974 0.39 +1.5
343,165 - GFF3974 0.40 -0.7
343,165 - GFF3974 0.40 +0.4
343,494 + GFF3974 0.74 -0.7
343,495 - GFF3974 0.74 -0.0
343,541 + GFF3974 0.78 +0.3
343,605 + GFF3974 0.85 +0.8
343,605 + GFF3974 0.85 -0.2
343,623 + GFF3974 0.87 -0.1
343,624 - GFF3974 0.87 -0.1
343,638 + GFF3974 0.89 +0.3
343,639 - GFF3974 0.89 +0.3
343,822 + -1.4
344,038 + GFF3975 0.32 -1.1
344,038 + GFF3975 0.32 +0.9
344,176 + GFF3975 0.48 +0.6
344,401 + GFF3975 0.74 -0.9
344,402 - GFF3975 0.74 +1.0
344,402 - GFF3975 0.74 +0.8

Or see this region's nucleotide sequence