Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3927 and GFF3928 are separated by 86 nucleotides GFF3928 and GFF3929 are separated by 84 nucleotides GFF3929 and GFF3930 are separated by 192 nucleotides
GFF3927 - GTP cyclohydrolase-2, at 295,200 to 296,312
GFF3927
GFF3928 - 3-beta-hydroxycholanate 3-dehydrogenase (NADP(+)), at 296,399 to 297,154
GFF3928
GFF3929 - Inner membrane protein YbhL, at 297,239 to 298,027
GFF3929
GFF3930 - hypothetical protein, at 298,220 to 299,134
GFF3930
Position (kb) 297
298
299 Strain fitness (log2 ratio) -2
-1
0
1
2 at 296.239 kb on - strand at 296.271 kb on + strand at 296.271 kb on + strand at 296.272 kb on - strand at 296.272 kb on - strand at 296.272 kb on - strand at 296.865 kb on - strand, within GFF3928 at 296.927 kb on + strand, within GFF3928 at 296.928 kb on - strand, within GFF3928 at 296.928 kb on - strand, within GFF3928 at 296.928 kb on - strand, within GFF3928 at 297.071 kb on + strand, within GFF3928 at 297.071 kb on + strand, within GFF3928 at 297.072 kb on - strand, within GFF3928 at 297.103 kb on - strand at 297.366 kb on + strand, within GFF3929 at 297.367 kb on - strand, within GFF3929 at 297.533 kb on + strand, within GFF3929 at 297.559 kb on - strand, within GFF3929 at 297.559 kb on - strand, within GFF3929 at 297.624 kb on + strand, within GFF3929 at 297.625 kb on - strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.870 kb on + strand, within GFF3929 at 297.918 kb on + strand, within GFF3929 at 297.924 kb on + strand, within GFF3929 at 297.924 kb on + strand, within GFF3929 at 297.939 kb on + strand, within GFF3929 at 298.194 kb on + strand at 298.195 kb on - strand at 298.485 kb on - strand, within GFF3930 at 298.485 kb on - strand, within GFF3930 at 298.485 kb on - strand, within GFF3930 at 298.493 kb on + strand, within GFF3930 at 298.493 kb on + strand, within GFF3930 at 298.494 kb on - strand, within GFF3930 at 298.509 kb on - strand, within GFF3930 at 298.589 kb on + strand, within GFF3930 at 298.589 kb on + strand, within GFF3930 at 298.589 kb on + strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.590 kb on - strand, within GFF3930 at 298.623 kb on - strand, within GFF3930 at 298.638 kb on - strand, within GFF3930 at 298.755 kb on - strand, within GFF3930 at 298.787 kb on + strand, within GFF3930 at 298.788 kb on - strand, within GFF3930 at 298.976 kb on + strand, within GFF3930 at 298.976 kb on + strand, within GFF3930 at 298.997 kb on + strand, within GFF3930 at 299.001 kb on - strand, within GFF3930 at 299.001 kb on - strand, within GFF3930 at 299.001 kb on - strand, within GFF3930 at 299.024 kb on + strand, within GFF3930 at 299.025 kb on - strand, within GFF3930 at 299.025 kb on - strand, within GFF3930
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 296,239 - -1.2 296,271 + +0.6 296,271 + +1.3 296,272 - +2.3 296,272 - -0.1 296,272 - +0.1 296,865 - GFF3928 0.62 +0.0 296,927 + GFF3928 0.70 -1.4 296,928 - GFF3928 0.70 +0.6 296,928 - GFF3928 0.70 +1.0 296,928 - GFF3928 0.70 -0.2 297,071 + GFF3928 0.89 +0.6 297,071 + GFF3928 0.89 -0.4 297,072 - GFF3928 0.89 -0.3 297,103 - +0.1 297,366 + GFF3929 0.16 +0.3 297,367 - GFF3929 0.16 -0.1 297,533 + GFF3929 0.37 +0.8 297,559 - GFF3929 0.41 -0.0 297,559 - GFF3929 0.41 -1.2 297,624 + GFF3929 0.49 +0.3 297,625 - GFF3929 0.49 +1.1 297,870 + GFF3929 0.80 +1.3 297,870 + GFF3929 0.80 +0.5 297,870 + GFF3929 0.80 -0.1 297,870 + GFF3929 0.80 -2.6 297,918 + GFF3929 0.86 -1.2 297,924 + GFF3929 0.87 -1.2 297,924 + GFF3929 0.87 +0.7 297,939 + GFF3929 0.89 +0.2 298,194 + -2.1 298,195 - +0.4 298,485 - GFF3930 0.29 +0.3 298,485 - GFF3930 0.29 -0.9 298,485 - GFF3930 0.29 +0.9 298,493 + GFF3930 0.30 -1.8 298,493 + GFF3930 0.30 -1.2 298,494 - GFF3930 0.30 +0.1 298,509 - GFF3930 0.32 -0.3 298,589 + GFF3930 0.40 +0.1 298,589 + GFF3930 0.40 -0.7 298,589 + GFF3930 0.40 +0.6 298,590 - GFF3930 0.40 -0.1 298,590 - GFF3930 0.40 +0.4 298,590 - GFF3930 0.40 -0.2 298,590 - GFF3930 0.40 -0.4 298,623 - GFF3930 0.44 -0.3 298,638 - GFF3930 0.46 -0.4 298,755 - GFF3930 0.58 +0.4 298,787 + GFF3930 0.62 +2.3 298,788 - GFF3930 0.62 +0.6 298,976 + GFF3930 0.83 +1.8 298,976 + GFF3930 0.83 -0.6 298,997 + GFF3930 0.85 +0.7 299,001 - GFF3930 0.85 +0.1 299,001 - GFF3930 0.85 +1.3 299,001 - GFF3930 0.85 +0.3 299,024 + GFF3930 0.88 +0.9 299,025 - GFF3930 0.88 +0.8 299,025 - GFF3930 0.88 +0.3
Or see this region's nucleotide sequence