Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3859 and GFF3860 are separated by 64 nucleotides GFF3860 and GFF3861 overlap by 4 nucleotides GFF3861 and GFF3862 overlap by 4 nucleotides
GFF3859 - hypothetical protein, at 225,898 to 227,175
GFF3859
GFF3860 - Hydrazine synthase subunit beta, at 227,240 to 228,226
GFF3860
GFF3861 - Linearmycin resistance ATP-binding protein LnrL, at 228,223 to 229,026
GFF3861
GFF3862 - hypothetical protein, at 229,023 to 229,889
GFF3862
Position (kb) 227
228
229 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 226.543 kb on + strand, within GFF3859 at 226.543 kb on + strand, within GFF3859 at 226.543 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.732 kb on + strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 226.733 kb on - strand, within GFF3859 at 227.174 kb on + strand at 227.321 kb on + strand at 227.322 kb on - strand at 227.323 kb on + strand at 227.330 kb on + strand at 227.330 kb on + strand at 227.331 kb on - strand at 227.331 kb on - strand at 227.582 kb on + strand, within GFF3860 at 227.762 kb on + strand, within GFF3860 at 228.410 kb on - strand, within GFF3861 at 228.547 kb on + strand, within GFF3861 at 228.865 kb on + strand, within GFF3861 at 228.865 kb on + strand, within GFF3861 at 229.086 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 226,543 + GFF3859 0.50 +0.4 226,543 + GFF3859 0.50 -0.3 226,543 + GFF3859 0.50 -2.9 226,732 + GFF3859 0.65 -0.7 226,732 + GFF3859 0.65 -1.0 226,732 + GFF3859 0.65 -1.1 226,732 + GFF3859 0.65 -0.3 226,733 - GFF3859 0.65 -1.6 226,733 - GFF3859 0.65 +0.1 226,733 - GFF3859 0.65 -0.5 226,733 - GFF3859 0.65 -0.7 227,174 + -0.3 227,321 + -0.4 227,322 - -1.4 227,323 + -1.1 227,330 + -1.4 227,330 + -2.7 227,331 - -2.2 227,331 - -0.9 227,582 + GFF3860 0.35 -2.9 227,762 + GFF3860 0.53 -0.6 228,410 - GFF3861 0.23 -0.8 228,547 + GFF3861 0.40 -0.6 228,865 + GFF3861 0.80 +0.5 228,865 + GFF3861 0.80 -2.8 229,086 + -0.5
Or see this region's nucleotide sequence