Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3852 and GFF3853 are separated by 23 nucleotides GFF3853 and GFF3854 are separated by 119 nucleotides GFF3854 and GFF3855 are separated by 533 nucleotides
GFF3852 - FtsZ-localized protein C, at 219,269 to 221,107
GFF3852
GFF3853 - Protease HtpX, at 221,131 to 222,042
GFF3853
GFF3854 - hypothetical protein, at 222,162 to 222,368
GFF3854
GFF3855 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 222,902 to 223,408
GFF3855
Position (kb) 221
222
223 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 221.435 kb on + strand, within GFF3853 at 221.435 kb on + strand, within GFF3853 at 221.630 kb on + strand, within GFF3853 at 221.630 kb on + strand, within GFF3853 at 221.876 kb on + strand, within GFF3853 at 221.876 kb on + strand, within GFF3853 at 221.876 kb on + strand, within GFF3853 at 221.877 kb on - strand, within GFF3853 at 222.085 kb on - strand at 222.085 kb on - strand at 222.352 kb on + strand at 222.353 kb on - strand at 222.556 kb on + strand at 222.573 kb on - strand at 222.826 kb on - strand at 222.834 kb on + strand at 222.835 kb on - strand at 222.875 kb on + strand at 222.907 kb on + strand at 222.908 kb on - strand at 222.913 kb on + strand at 222.914 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 221,435 + GFF3853 0.33 +1.5 221,435 + GFF3853 0.33 +0.8 221,630 + GFF3853 0.55 +0.0 221,630 + GFF3853 0.55 +0.1 221,876 + GFF3853 0.82 +0.8 221,876 + GFF3853 0.82 +0.6 221,876 + GFF3853 0.82 +0.5 221,877 - GFF3853 0.82 -0.8 222,085 - -0.3 222,085 - -0.2 222,352 + +0.5 222,353 - -0.1 222,556 + +0.5 222,573 - -0.2 222,826 - -3.7 222,834 + -0.9 222,835 - -2.4 222,875 + -1.9 222,907 + -3.1 222,908 - -0.5 222,913 + -2.5 222,914 - -1.4
Or see this region's nucleotide sequence