Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3842 and GFF3843 are separated by 19 nucleotides GFF3843 and GFF3844 are separated by 88 nucleotides GFF3844 and GFF3845 are separated by 28 nucleotides
GFF3842 - hypothetical protein, at 203,760 to 206,093
GFF3842
GFF3843 - hypothetical protein, at 206,113 to 208,233
GFF3843
GFF3844 - hypothetical protein, at 208,322 to 209,188
GFF3844
GFF3845 - hypothetical protein, at 209,217 to 209,618
GFF3845
Position (kb) 206
207
208
209 Strain fitness (log2 ratio) -2
-1
0
1 at 205.315 kb on - strand, within GFF3842 at 205.315 kb on - strand, within GFF3842 at 205.315 kb on - strand, within GFF3842 at 205.518 kb on + strand, within GFF3842 at 205.519 kb on - strand, within GFF3842 at 205.519 kb on - strand, within GFF3842 at 205.519 kb on - strand, within GFF3842 at 205.519 kb on - strand, within GFF3842 at 206.075 kb on - strand at 206.122 kb on + strand at 206.123 kb on - strand at 206.147 kb on - strand at 206.234 kb on - strand at 206.251 kb on + strand at 206.384 kb on - strand, within GFF3843 at 206.435 kb on - strand, within GFF3843 at 206.435 kb on - strand, within GFF3843 at 206.435 kb on - strand, within GFF3843 at 206.455 kb on - strand, within GFF3843 at 206.485 kb on + strand, within GFF3843 at 206.485 kb on + strand, within GFF3843 at 206.657 kb on - strand, within GFF3843 at 206.746 kb on + strand, within GFF3843 at 206.746 kb on + strand, within GFF3843 at 206.746 kb on + strand, within GFF3843 at 206.746 kb on + strand, within GFF3843 at 206.746 kb on + strand, within GFF3843 at 206.746 kb on + strand, within GFF3843 at 206.747 kb on - strand, within GFF3843 at 206.747 kb on - strand, within GFF3843 at 206.747 kb on - strand, within GFF3843 at 206.747 kb on - strand, within GFF3843 at 206.747 kb on - strand, within GFF3843 at 206.747 kb on - strand, within GFF3843 at 206.917 kb on + strand, within GFF3843 at 206.917 kb on + strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.918 kb on - strand, within GFF3843 at 206.938 kb on + strand, within GFF3843 at 206.939 kb on - strand, within GFF3843 at 206.984 kb on - strand, within GFF3843 at 206.984 kb on - strand, within GFF3843 at 207.075 kb on + strand, within GFF3843 at 207.175 kb on + strand, within GFF3843 at 207.232 kb on + strand, within GFF3843 at 207.232 kb on + strand, within GFF3843 at 207.232 kb on + strand, within GFF3843 at 207.232 kb on + strand, within GFF3843 at 207.385 kb on + strand, within GFF3843 at 207.389 kb on - strand, within GFF3843 at 207.406 kb on + strand, within GFF3843 at 207.407 kb on - strand, within GFF3843 at 207.844 kb on - strand, within GFF3843 at 208.106 kb on - strand at 208.138 kb on + strand at 208.139 kb on - strand at 208.230 kb on - strand at 208.757 kb on + strand, within GFF3844 at 208.757 kb on + strand, within GFF3844 at 208.767 kb on + strand, within GFF3844 at 208.850 kb on + strand, within GFF3844 at 208.949 kb on + strand, within GFF3844 at 208.950 kb on - strand, within GFF3844 at 209.108 kb on + strand at 209.108 kb on + strand at 209.109 kb on - strand at 209.109 kb on - strand at 209.109 kb on - strand at 209.147 kb on + strand at 209.147 kb on + strand at 209.147 kb on + strand at 209.148 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 205,315 - GFF3842 0.67 -1.4 205,315 - GFF3842 0.67 +0.1 205,315 - GFF3842 0.67 +0.3 205,518 + GFF3842 0.75 -0.9 205,519 - GFF3842 0.75 +0.8 205,519 - GFF3842 0.75 -0.7 205,519 - GFF3842 0.75 -0.8 205,519 - GFF3842 0.75 -0.4 206,075 - -1.1 206,122 + -1.0 206,123 - -1.5 206,147 - +0.4 206,234 - +0.3 206,251 + -2.0 206,384 - GFF3843 0.13 -0.2 206,435 - GFF3843 0.15 +0.3 206,435 - GFF3843 0.15 +0.1 206,435 - GFF3843 0.15 +0.2 206,455 - GFF3843 0.16 -0.3 206,485 + GFF3843 0.18 -0.2 206,485 + GFF3843 0.18 +0.8 206,657 - GFF3843 0.26 +0.3 206,746 + GFF3843 0.30 +0.6 206,746 + GFF3843 0.30 +0.5 206,746 + GFF3843 0.30 -0.8 206,746 + GFF3843 0.30 +0.9 206,746 + GFF3843 0.30 -0.9 206,746 + GFF3843 0.30 -2.6 206,747 - GFF3843 0.30 +1.1 206,747 - GFF3843 0.30 -0.6 206,747 - GFF3843 0.30 -0.2 206,747 - GFF3843 0.30 -0.6 206,747 - GFF3843 0.30 +0.3 206,747 - GFF3843 0.30 -0.0 206,917 + GFF3843 0.38 +0.0 206,917 + GFF3843 0.38 -0.7 206,918 - GFF3843 0.38 +0.9 206,918 - GFF3843 0.38 +0.4 206,918 - GFF3843 0.38 -0.3 206,918 - GFF3843 0.38 -0.8 206,918 - GFF3843 0.38 -0.6 206,918 - GFF3843 0.38 +0.3 206,918 - GFF3843 0.38 +1.0 206,938 + GFF3843 0.39 +0.9 206,939 - GFF3843 0.39 -0.1 206,984 - GFF3843 0.41 -1.3 206,984 - GFF3843 0.41 +0.7 207,075 + GFF3843 0.45 +0.1 207,175 + GFF3843 0.50 +0.8 207,232 + GFF3843 0.53 -0.2 207,232 + GFF3843 0.53 +0.3 207,232 + GFF3843 0.53 -0.9 207,232 + GFF3843 0.53 +0.1 207,385 + GFF3843 0.60 +0.1 207,389 - GFF3843 0.60 -1.0 207,406 + GFF3843 0.61 +0.1 207,407 - GFF3843 0.61 +0.9 207,844 - GFF3843 0.82 -1.6 208,106 - -0.5 208,138 + +0.1 208,139 - -0.4 208,230 - +0.4 208,757 + GFF3844 0.50 +0.6 208,757 + GFF3844 0.50 -2.0 208,767 + GFF3844 0.51 +1.2 208,850 + GFF3844 0.61 +0.3 208,949 + GFF3844 0.72 -0.6 208,950 - GFF3844 0.72 -0.2 209,108 + +0.3 209,108 + -0.2 209,109 - +0.1 209,109 - +1.0 209,109 - +0.1 209,147 + +0.2 209,147 + -0.4 209,147 + +0.3 209,148 - -0.7
Or see this region's nucleotide sequence