Strain Fitness in Xanthobacter sp. DMC5 around GFF3807

Experiment: Methanol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF3806 and GFF3807 are separated by 349 nucleotidesGFF3807 and GFF3808 are separated by 276 nucleotidesGFF3808 and GFF3809 overlap by 29 nucleotides GFF3806 - hypothetical protein, at 163,643 to 164,617 GFF3806 GFF3807 - Methanol dehydrogenase [cytochrome c] subunit 1, at 164,967 to 166,772 GFF3807 GFF3808 - hypothetical protein, at 167,049 to 167,591 GFF3808 GFF3809 - hypothetical protein, at 167,563 to 168,456 GFF3809 Position (kb) 164 165 166 167Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 164.094 kb on - strand, within GFF3806at 164.094 kb on - strand, within GFF3806at 164.450 kb on + strand, within GFF3806at 164.594 kb on + strandat 164.661 kb on + strandat 164.744 kb on + strandat 164.744 kb on + strandat 164.745 kb on - strandat 164.872 kb on + strandat 164.873 kb on - strandat 164.873 kb on - strandat 164.873 kb on - strandat 164.873 kb on - strandat 164.873 kb on - strandat 165.057 kb on - strandat 165.057 kb on - strandat 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.231 kb on + strand, within GFF3807at 165.232 kb on - strand, within GFF3807at 165.232 kb on - strand, within GFF3807at 165.232 kb on - strand, within GFF3807at 165.232 kb on - strand, within GFF3807at 165.232 kb on - strand, within GFF3807at 165.232 kb on - strand, within GFF3807at 165.262 kb on - strand, within GFF3807at 165.262 kb on - strand, within GFF3807at 165.300 kb on - strand, within GFF3807at 165.303 kb on + strand, within GFF3807at 165.304 kb on - strand, within GFF3807at 165.372 kb on + strand, within GFF3807at 165.373 kb on - strand, within GFF3807at 165.612 kb on + strand, within GFF3807at 165.750 kb on + strand, within GFF3807at 165.750 kb on + strand, within GFF3807at 165.751 kb on - strand, within GFF3807at 165.780 kb on + strand, within GFF3807at 165.780 kb on + strand, within GFF3807at 165.780 kb on + strand, within GFF3807at 165.781 kb on - strand, within GFF3807at 165.781 kb on - strand, within GFF3807at 165.781 kb on - strand, within GFF3807at 165.783 kb on + strand, within GFF3807at 165.784 kb on - strand, within GFF3807at 165.784 kb on - strand, within GFF3807at 165.784 kb on - strand, within GFF3807at 165.895 kb on - strand, within GFF3807at 165.895 kb on - strand, within GFF3807at 166.004 kb on + strand, within GFF3807at 166.017 kb on + strand, within GFF3807at 166.018 kb on - strand, within GFF3807at 166.018 kb on - strand, within GFF3807at 166.119 kb on + strand, within GFF3807at 166.119 kb on + strand, within GFF3807at 166.120 kb on - strand, within GFF3807at 166.120 kb on - strand, within GFF3807at 166.257 kb on + strand, within GFF3807at 166.287 kb on + strand, within GFF3807at 166.287 kb on + strand, within GFF3807at 166.288 kb on - strand, within GFF3807at 166.308 kb on + strand, within GFF3807at 166.308 kb on + strand, within GFF3807at 166.308 kb on + strand, within GFF3807at 166.309 kb on - strand, within GFF3807at 166.326 kb on + strand, within GFF3807at 166.326 kb on + strand, within GFF3807at 166.326 kb on + strand, within GFF3807at 166.326 kb on + strand, within GFF3807at 166.327 kb on - strand, within GFF3807at 166.327 kb on - strand, within GFF3807at 166.327 kb on - strand, within GFF3807at 166.488 kb on + strand, within GFF3807at 166.488 kb on + strand, within GFF3807at 166.489 kb on - strand, within GFF3807at 166.489 kb on - strand, within GFF3807at 166.506 kb on + strand, within GFF3807at 166.506 kb on + strand, within GFF3807at 166.506 kb on + strand, within GFF3807at 166.507 kb on - strand, within GFF3807at 166.545 kb on + strand, within GFF3807at 166.546 kb on - strand, within GFF3807at 166.546 kb on - strand, within GFF3807at 166.546 kb on - strand, within GFF3807at 166.590 kb on + strand, within GFF3807at 166.590 kb on + strand, within GFF3807at 166.590 kb on + strand, within GFF3807at 166.591 kb on - strand, within GFF3807at 166.611 kb on + strandat 166.611 kb on + strandat 166.611 kb on + strandat 166.726 kb on - strandat 166.726 kb on - strandat 166.785 kb on - strandat 167.188 kb on - strand, within GFF3808at 167.190 kb on + strand, within GFF3808at 167.214 kb on + strand, within GFF3808at 167.215 kb on + strand, within GFF3808at 167.215 kb on - strand, within GFF3808at 167.215 kb on - strand, within GFF3808at 167.215 kb on - strand, within GFF3808at 167.215 kb on - strand, within GFF3808at 167.253 kb on + strand, within GFF3808at 167.262 kb on + strand, within GFF3808at 167.322 kb on + strand, within GFF3808at 167.463 kb on + strand, within GFF3808at 167.464 kb on - strand, within GFF3808at 167.464 kb on - strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.478 kb on + strand, within GFF3808at 167.479 kb on - strand, within GFF3808at 167.479 kb on - strand, within GFF3808at 167.479 kb on - strand, within GFF3808at 167.485 kb on - strand, within GFF3808

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
remove
164,094 - GFF3806 0.46 -0.0
164,094 - GFF3806 0.46 +0.0
164,450 + GFF3806 0.83 -0.4
164,594 + +0.2
164,661 + +0.0
164,744 + -0.4
164,744 + +0.2
164,745 - -2.6
164,872 + -0.3
164,873 - -2.3
164,873 - -2.0
164,873 - -0.1
164,873 - -3.1
164,873 - -0.5
165,057 - -2.2
165,057 - -1.9
165,231 + GFF3807 0.15 -0.7
165,231 + GFF3807 0.15 -0.5
165,231 + GFF3807 0.15 -2.6
165,231 + GFF3807 0.15 -1.2
165,231 + GFF3807 0.15 -2.9
165,231 + GFF3807 0.15 -1.9
165,231 + GFF3807 0.15 -0.5
165,231 + GFF3807 0.15 -1.6
165,232 - GFF3807 0.15 -1.5
165,232 - GFF3807 0.15 -0.5
165,232 - GFF3807 0.15 -3.4
165,232 - GFF3807 0.15 -0.8
165,232 - GFF3807 0.15 -2.0
165,232 - GFF3807 0.15 -0.3
165,262 - GFF3807 0.16 -1.4
165,262 - GFF3807 0.16 -1.5
165,300 - GFF3807 0.18 -1.2
165,303 + GFF3807 0.19 -1.3
165,304 - GFF3807 0.19 -2.6
165,372 + GFF3807 0.22 -1.5
165,373 - GFF3807 0.22 -0.9
165,612 + GFF3807 0.36 -2.1
165,750 + GFF3807 0.43 -1.4
165,750 + GFF3807 0.43 -2.1
165,751 - GFF3807 0.43 -1.0
165,780 + GFF3807 0.45 -1.1
165,780 + GFF3807 0.45 -0.9
165,780 + GFF3807 0.45 -2.0
165,781 - GFF3807 0.45 +0.1
165,781 - GFF3807 0.45 -1.5
165,781 - GFF3807 0.45 -2.0
165,783 + GFF3807 0.45 -2.0
165,784 - GFF3807 0.45 -2.8
165,784 - GFF3807 0.45 -1.3
165,784 - GFF3807 0.45 -2.8
165,895 - GFF3807 0.51 -2.8
165,895 - GFF3807 0.51 -1.4
166,004 + GFF3807 0.57 -1.3
166,017 + GFF3807 0.58 -0.9
166,018 - GFF3807 0.58 -1.1
166,018 - GFF3807 0.58 -1.3
166,119 + GFF3807 0.64 -2.1
166,119 + GFF3807 0.64 -0.7
166,120 - GFF3807 0.64 -1.3
166,120 - GFF3807 0.64 -0.9
166,257 + GFF3807 0.71 -2.3
166,287 + GFF3807 0.73 -1.1
166,287 + GFF3807 0.73 -0.6
166,288 - GFF3807 0.73 -0.9
166,308 + GFF3807 0.74 -2.3
166,308 + GFF3807 0.74 -1.6
166,308 + GFF3807 0.74 -3.1
166,309 - GFF3807 0.74 -1.6
166,326 + GFF3807 0.75 -2.1
166,326 + GFF3807 0.75 -2.1
166,326 + GFF3807 0.75 -2.3
166,326 + GFF3807 0.75 -1.9
166,327 - GFF3807 0.75 -1.5
166,327 - GFF3807 0.75 -2.3
166,327 - GFF3807 0.75 -2.1
166,488 + GFF3807 0.84 -3.8
166,488 + GFF3807 0.84 -1.9
166,489 - GFF3807 0.84 -1.5
166,489 - GFF3807 0.84 -0.1
166,506 + GFF3807 0.85 -3.1
166,506 + GFF3807 0.85 -0.9
166,506 + GFF3807 0.85 -1.9
166,507 - GFF3807 0.85 -1.5
166,545 + GFF3807 0.87 -0.5
166,546 - GFF3807 0.87 -2.4
166,546 - GFF3807 0.87 +1.3
166,546 - GFF3807 0.87 -2.3
166,590 + GFF3807 0.90 -1.0
166,590 + GFF3807 0.90 +0.5
166,590 + GFF3807 0.90 -2.1
166,591 - GFF3807 0.90 -0.6
166,611 + -2.2
166,611 + -0.5
166,611 + -1.4
166,726 - -1.1
166,726 - -3.7
166,785 - -1.3
167,188 - GFF3808 0.26 +0.9
167,190 + GFF3808 0.26 +1.6
167,214 + GFF3808 0.30 +1.3
167,215 + GFF3808 0.31 -0.6
167,215 - GFF3808 0.31 -0.3
167,215 - GFF3808 0.31 -0.9
167,215 - GFF3808 0.31 +0.4
167,215 - GFF3808 0.31 -0.7
167,253 + GFF3808 0.38 +0.2
167,262 + GFF3808 0.39 +0.0
167,322 + GFF3808 0.50 +0.7
167,463 + GFF3808 0.76 +0.5
167,464 - GFF3808 0.76 +2.4
167,464 - GFF3808 0.76 +0.4
167,478 + GFF3808 0.79 -0.5
167,478 + GFF3808 0.79 -0.5
167,478 + GFF3808 0.79 +0.1
167,478 + GFF3808 0.79 -0.1
167,479 - GFF3808 0.79 -0.6
167,479 - GFF3808 0.79 +0.9
167,479 - GFF3808 0.79 -1.7
167,485 - GFF3808 0.80 -1.2

Or see this region's nucleotide sequence