Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3708 and GFF3709 overlap by 4 nucleotides GFF3709 and GFF3710 are separated by 1 nucleotides GFF3710 and GFF3711 overlap by 4 nucleotides
GFF3708 - PqqA peptide cyclase, at 50,746 to 51,927
GFF3708
GFF3709 - Bifunctional coenzyme PQQ synthesis protein C/D, at 51,924 to 52,199
GFF3709
GFF3710 - Bifunctional coenzyme PQQ synthesis protein C/D, at 52,201 to 53,022
GFF3710
GFF3711 - Coenzyme PQQ synthesis protein B, at 53,019 to 53,918
GFF3711
Position (kb) 51
52
53 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 51.176 kb on + strand, within GFF3708 at 51.177 kb on - strand, within GFF3708 at 51.180 kb on - strand, within GFF3708 at 51.299 kb on + strand, within GFF3708 at 51.311 kb on + strand, within GFF3708 at 51.311 kb on + strand, within GFF3708 at 51.311 kb on + strand, within GFF3708 at 51.312 kb on - strand, within GFF3708 at 51.485 kb on + strand, within GFF3708 at 51.617 kb on + strand, within GFF3708 at 51.618 kb on - strand, within GFF3708 at 51.618 kb on - strand, within GFF3708 at 51.798 kb on - strand, within GFF3708 at 52.006 kb on + strand, within GFF3709 at 52.007 kb on - strand, within GFF3709 at 52.265 kb on + strand at 52.266 kb on - strand at 52.274 kb on + strand at 52.275 kb on - strand at 52.313 kb on + strand, within GFF3710 at 52.373 kb on + strand, within GFF3710 at 52.373 kb on + strand, within GFF3710 at 52.427 kb on + strand, within GFF3710 at 52.428 kb on - strand, within GFF3710 at 52.440 kb on - strand, within GFF3710 at 52.457 kb on + strand, within GFF3710 at 52.457 kb on + strand, within GFF3710 at 52.458 kb on - strand, within GFF3710 at 52.479 kb on + strand, within GFF3710 at 52.479 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.568 kb on + strand, within GFF3710 at 52.622 kb on + strand, within GFF3710 at 52.622 kb on + strand, within GFF3710 at 52.623 kb on - strand, within GFF3710 at 52.794 kb on - strand, within GFF3710 at 52.860 kb on + strand, within GFF3710 at 52.861 kb on - strand, within GFF3710 at 52.861 kb on - strand, within GFF3710 at 53.022 kb on + strand at 53.023 kb on - strand at 53.023 kb on - strand at 53.123 kb on + strand, within GFF3711
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 51,176 + GFF3708 0.36 -2.4 51,177 - GFF3708 0.36 -2.4 51,180 - GFF3708 0.37 -1.3 51,299 + GFF3708 0.47 -1.2 51,311 + GFF3708 0.48 +1.6 51,311 + GFF3708 0.48 -0.4 51,311 + GFF3708 0.48 -2.8 51,312 - GFF3708 0.48 -2.1 51,485 + GFF3708 0.63 -1.1 51,617 + GFF3708 0.74 -2.1 51,618 - GFF3708 0.74 -3.5 51,618 - GFF3708 0.74 -2.7 51,798 - GFF3708 0.89 -1.7 52,006 + GFF3709 0.30 -2.6 52,007 - GFF3709 0.30 -1.1 52,265 + -1.6 52,266 - -1.4 52,274 + -1.0 52,275 - -2.5 52,313 + GFF3710 0.14 -2.3 52,373 + GFF3710 0.21 -1.8 52,373 + GFF3710 0.21 -2.2 52,427 + GFF3710 0.27 -1.8 52,428 - GFF3710 0.28 -0.7 52,440 - GFF3710 0.29 +0.5 52,457 + GFF3710 0.31 -4.2 52,457 + GFF3710 0.31 -1.4 52,458 - GFF3710 0.31 -0.4 52,479 + GFF3710 0.34 -1.7 52,479 + GFF3710 0.34 -1.1 52,568 + GFF3710 0.45 -1.6 52,568 + GFF3710 0.45 -1.8 52,568 + GFF3710 0.45 -3.0 52,568 + GFF3710 0.45 -2.1 52,622 + GFF3710 0.51 -2.5 52,622 + GFF3710 0.51 -0.3 52,623 - GFF3710 0.51 -2.3 52,794 - GFF3710 0.72 +0.5 52,860 + GFF3710 0.80 -2.4 52,861 - GFF3710 0.80 -0.7 52,861 - GFF3710 0.80 -1.2 53,022 + -2.2 53,023 - +0.6 53,023 - -1.2 53,123 + GFF3711 0.12 -1.9
Or see this region's nucleotide sequence