Strain Fitness in Xanthobacter sp. DMC5 around GFF3696

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3695 and GFF3696 are separated by 339 nucleotidesGFF3696 and GFF3697 are separated by 91 nucleotides GFF3695 - Malate synthase A, at 37,393 to 39,003 GFF3695 GFF3696 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 39,343 to 40,245 GFF3696 GFF3697 - Methenyltetrahydromethanopterin cyclohydrolase, at 40,337 to 41,347 GFF3697 Position (kb) 39 40 41Strain fitness (log2 ratio) -3 -2 -1 0 1at 38.683 kb on + strand, within GFF3695at 38.684 kb on - strand, within GFF3695at 38.725 kb on + strand, within GFF3695at 38.986 kb on + strandat 39.227 kb on - strandat 39.360 kb on + strandat 39.360 kb on + strandat 39.628 kb on + strand, within GFF3696at 39.629 kb on - strand, within GFF3696at 39.745 kb on + strand, within GFF3696at 41.210 kb on + strand, within GFF3697at 41.211 kb on - strand, within GFF3697at 41.211 kb on - strand, within GFF3697at 41.226 kb on - strand, within GFF3697

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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38,683 + GFF3695 0.80 +0.9
38,684 - GFF3695 0.80 -0.4
38,725 + GFF3695 0.83 -0.6
38,986 + +0.7
39,227 - -3.0
39,360 + -2.0
39,360 + -3.6
39,628 + GFF3696 0.32 -3.1
39,629 - GFF3696 0.32 -0.9
39,745 + GFF3696 0.45 -1.3
41,210 + GFF3697 0.86 -0.5
41,211 - GFF3697 0.86 -1.5
41,211 - GFF3697 0.86 +0.3
41,226 - GFF3697 0.88 -1.6

Or see this region's nucleotide sequence