Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3681 and GFF3682 are separated by 110 nucleotides GFF3682 and GFF3683 are separated by 133 nucleotides GFF3683 and GFF3684 overlap by 4 nucleotides
GFF3681 - Transcriptional regulatory protein WalR, at 24,066 to 24,752
GFF3681
GFF3682 - hypothetical protein, at 24,863 to 25,414
GFF3682
GFF3683 - Lactate utilization protein A, at 25,548 to 26,348
GFF3683
GFF3684 - Lactate utilization protein B, at 26,345 to 27,802
GFF3684
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1
2 at 24.795 kb on - strand at 24.850 kb on - strand at 25.222 kb on + strand, within GFF3682 at 25.222 kb on + strand, within GFF3682 at 25.223 kb on - strand, within GFF3682 at 25.229 kb on + strand, within GFF3682 at 25.229 kb on + strand, within GFF3682 at 25.230 kb on - strand, within GFF3682 at 25.410 kb on + strand at 25.411 kb on - strand at 25.412 kb on + strand at 25.413 kb on - strand at 25.488 kb on + strand at 25.489 kb on - strand at 25.489 kb on - strand at 25.491 kb on - strand at 25.773 kb on - strand, within GFF3683 at 25.791 kb on + strand, within GFF3683 at 25.962 kb on + strand, within GFF3683 at 25.963 kb on - strand, within GFF3683 at 25.963 kb on - strand, within GFF3683 at 25.980 kb on + strand, within GFF3683 at 25.981 kb on - strand, within GFF3683 at 26.478 kb on + strand at 26.479 kb on - strand at 26.479 kb on - strand at 26.549 kb on + strand, within GFF3684 at 26.549 kb on + strand, within GFF3684 at 26.765 kb on + strand, within GFF3684 at 26.765 kb on + strand, within GFF3684 at 26.765 kb on + strand, within GFF3684 at 26.766 kb on - strand, within GFF3684 at 27.037 kb on + strand, within GFF3684 at 27.038 kb on - strand, within GFF3684 at 27.164 kb on + strand, within GFF3684 at 27.165 kb on - strand, within GFF3684 at 27.165 kb on - strand, within GFF3684 at 27.222 kb on - strand, within GFF3684 at 27.329 kb on + strand, within GFF3684 at 27.330 kb on - strand, within GFF3684 at 27.330 kb on - strand, within GFF3684
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 24,795 - -0.1 24,850 - -0.0 25,222 + GFF3682 0.65 -0.1 25,222 + GFF3682 0.65 -0.1 25,223 - GFF3682 0.65 +0.7 25,229 + GFF3682 0.66 -0.8 25,229 + GFF3682 0.66 +0.7 25,230 - GFF3682 0.66 +0.1 25,410 + -0.1 25,411 - +0.7 25,412 + -0.3 25,413 - -0.9 25,488 + -0.2 25,489 - +0.3 25,489 - +1.8 25,491 - -0.5 25,773 - GFF3683 0.28 +0.7 25,791 + GFF3683 0.30 +0.9 25,962 + GFF3683 0.52 -0.0 25,963 - GFF3683 0.52 +1.0 25,963 - GFF3683 0.52 -0.6 25,980 + GFF3683 0.54 +0.1 25,981 - GFF3683 0.54 -1.1 26,478 + +0.1 26,479 - -1.4 26,479 - -0.5 26,549 + GFF3684 0.14 +0.2 26,549 + GFF3684 0.14 +0.3 26,765 + GFF3684 0.29 +0.1 26,765 + GFF3684 0.29 -0.9 26,765 + GFF3684 0.29 -0.1 26,766 - GFF3684 0.29 -0.1 27,037 + GFF3684 0.47 -0.3 27,038 - GFF3684 0.48 +0.1 27,164 + GFF3684 0.56 -0.8 27,165 - GFF3684 0.56 +0.6 27,165 - GFF3684 0.56 -0.3 27,222 - GFF3684 0.60 +0.7 27,329 + GFF3684 0.67 -2.0 27,330 - GFF3684 0.68 -0.1 27,330 - GFF3684 0.68 -0.4
Or see this region's nucleotide sequence