Strain Fitness in Xanthobacter sp. DMC5 around GFF3645

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3644 and GFF3645 are separated by 5 nucleotidesGFF3645 and GFF3646 are separated by 24 nucleotides GFF3644 - hypothetical protein, at 511,753 to 512,181 GFF3644 GFF3645 - Conjugal transfer protein TraG, at 512,187 to 514,166 GFF3645 GFF3646 - hypothetical protein, at 514,191 to 515,930 GFF3646 Position (kb) 512 513 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 511.265 kb on + strandat 511.326 kb on + strandat 511.327 kb on - strandat 511.338 kb on + strandat 511.341 kb on + strandat 511.341 kb on + strandat 511.341 kb on + strandat 511.370 kb on + strandat 511.370 kb on + strandat 511.431 kb on + strandat 511.431 kb on + strandat 511.432 kb on - strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.496 kb on + strandat 511.560 kb on + strandat 511.560 kb on + strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.561 kb on - strandat 511.605 kb on + strandat 511.612 kb on + strandat 511.625 kb on - strandat 511.625 kb on - strandat 511.641 kb on + strandat 511.641 kb on + strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.642 kb on - strandat 511.657 kb on - strandat 511.696 kb on + strandat 511.742 kb on + strandat 511.800 kb on + strand, within GFF3644at 511.801 kb on - strand, within GFF3644at 511.801 kb on - strand, within GFF3644at 511.848 kb on - strand, within GFF3644at 511.947 kb on + strand, within GFF3644at 512.144 kb on + strandat 512.144 kb on + strandat 512.145 kb on - strandat 512.150 kb on + strandat 512.198 kb on + strandat 512.199 kb on - strandat 512.536 kb on + strand, within GFF3645at 512.536 kb on + strand, within GFF3645at 512.536 kb on + strand, within GFF3645at 512.537 kb on - strand, within GFF3645at 512.537 kb on - strand, within GFF3645at 512.537 kb on - strand, within GFF3645at 512.539 kb on + strand, within GFF3645at 512.540 kb on - strand, within GFF3645at 512.540 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.702 kb on - strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.830 kb on + strand, within GFF3645at 512.831 kb on - strand, within GFF3645at 512.831 kb on - strand, within GFF3645at 512.831 kb on - strand, within GFF3645at 512.839 kb on + strand, within GFF3645at 512.949 kb on + strand, within GFF3645at 512.950 kb on - strand, within GFF3645at 512.950 kb on - strand, within GFF3645at 512.950 kb on - strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.079 kb on + strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.080 kb on - strand, within GFF3645at 513.541 kb on + strand, within GFF3645at 513.542 kb on - strand, within GFF3645at 513.560 kb on + strand, within GFF3645at 513.561 kb on - strand, within GFF3645at 513.611 kb on + strand, within GFF3645at 513.611 kb on + strand, within GFF3645at 513.635 kb on + strand, within GFF3645at 513.698 kb on + strand, within GFF3645at 513.698 kb on + strand, within GFF3645at 513.754 kb on + strand, within GFF3645at 513.755 kb on - strand, within GFF3645at 513.755 kb on - strand, within GFF3645at 513.755 kb on - strand, within GFF3645at 513.755 kb on - strand, within GFF3645at 513.847 kb on + strand, within GFF3645at 513.847 kb on + strand, within GFF3645at 513.847 kb on + strand, within GFF3645at 513.847 kb on + strand, within GFF3645at 513.847 kb on + strand, within GFF3645at 513.847 kb on + strand, within GFF3645at 513.967 kb on + strand, within GFF3645at 513.967 kb on + strand, within GFF3645at 513.982 kb on + strandat 513.982 kb on + strandat 513.982 kb on + strandat 513.983 kb on - strandat 513.983 kb on - strandat 514.012 kb on + strandat 514.012 kb on + strandat 514.012 kb on + strandat 514.013 kb on - strandat 514.372 kb on + strand, within GFF3646at 514.372 kb on + strand, within GFF3646at 514.372 kb on + strand, within GFF3646at 514.372 kb on + strand, within GFF3646at 514.373 kb on - strand, within GFF3646at 514.373 kb on - strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.387 kb on + strand, within GFF3646at 514.834 kb on + strand, within GFF3646at 514.835 kb on - strand, within GFF3646at 514.835 kb on - strand, within GFF3646at 514.921 kb on + strand, within GFF3646at 514.921 kb on + strand, within GFF3646at 514.921 kb on + strand, within GFF3646at 514.921 kb on + strand, within GFF3646at 514.921 kb on + strand, within GFF3646at 514.922 kb on - strand, within GFF3646at 514.922 kb on - strand, within GFF3646at 514.922 kb on - strand, within GFF3646

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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511,265 + +0.3
511,326 + +0.7
511,327 - -0.6
511,338 + +0.8
511,341 + -1.0
511,341 + +0.4
511,341 + +0.7
511,370 + -0.7
511,370 + +0.5
511,431 + +0.7
511,431 + -1.6
511,432 - -0.6
511,496 + -0.6
511,496 + -0.2
511,496 + -0.2
511,496 + +1.3
511,560 + +0.4
511,560 + +1.0
511,561 - +1.5
511,561 - -0.2
511,561 - -1.4
511,561 - -0.5
511,561 - +0.4
511,605 + -0.3
511,612 + +0.1
511,625 - +0.6
511,625 - +1.4
511,641 + +0.1
511,641 + -0.5
511,642 - -0.2
511,642 - +1.1
511,642 - +0.4
511,642 - +0.4
511,642 - +0.1
511,642 - +0.6
511,657 - +0.5
511,696 + +0.2
511,742 + +0.5
511,800 + GFF3644 0.11 -0.5
511,801 - GFF3644 0.11 -0.3
511,801 - GFF3644 0.11 +0.6
511,848 - GFF3644 0.22 +0.2
511,947 + GFF3644 0.45 +0.6
512,144 + +0.3
512,144 + +0.6
512,145 - +0.1
512,150 + -0.2
512,198 + -0.2
512,199 - +1.3
512,536 + GFF3645 0.18 -0.9
512,536 + GFF3645 0.18 -0.7
512,536 + GFF3645 0.18 +0.1
512,537 - GFF3645 0.18 -1.1
512,537 - GFF3645 0.18 -1.0
512,537 - GFF3645 0.18 -0.6
512,539 + GFF3645 0.18 -0.3
512,540 - GFF3645 0.18 +0.6
512,540 - GFF3645 0.18 -0.6
512,702 - GFF3645 0.26 -1.6
512,702 - GFF3645 0.26 +0.7
512,702 - GFF3645 0.26 +0.3
512,702 - GFF3645 0.26 -0.3
512,702 - GFF3645 0.26 +1.0
512,702 - GFF3645 0.26 -0.9
512,702 - GFF3645 0.26 -0.6
512,702 - GFF3645 0.26 -0.2
512,702 - GFF3645 0.26 +0.0
512,830 + GFF3645 0.32 +1.4
512,830 + GFF3645 0.32 -0.1
512,830 + GFF3645 0.32 +1.6
512,830 + GFF3645 0.32 -0.7
512,830 + GFF3645 0.32 -1.4
512,831 - GFF3645 0.33 -0.2
512,831 - GFF3645 0.33 -0.7
512,831 - GFF3645 0.33 +0.5
512,839 + GFF3645 0.33 -0.1
512,949 + GFF3645 0.38 -0.3
512,950 - GFF3645 0.39 -0.5
512,950 - GFF3645 0.39 -1.2
512,950 - GFF3645 0.39 -0.9
513,079 + GFF3645 0.45 -0.5
513,079 + GFF3645 0.45 +0.0
513,079 + GFF3645 0.45 +0.4
513,079 + GFF3645 0.45 +0.2
513,080 - GFF3645 0.45 +0.6
513,080 - GFF3645 0.45 +0.9
513,080 - GFF3645 0.45 +0.7
513,080 - GFF3645 0.45 -0.5
513,080 - GFF3645 0.45 +0.1
513,080 - GFF3645 0.45 +0.3
513,080 - GFF3645 0.45 +2.3
513,541 + GFF3645 0.68 -0.2
513,542 - GFF3645 0.68 +0.2
513,560 + GFF3645 0.69 +0.2
513,561 - GFF3645 0.69 +0.8
513,611 + GFF3645 0.72 -0.2
513,611 + GFF3645 0.72 +0.6
513,635 + GFF3645 0.73 -0.2
513,698 + GFF3645 0.76 -0.1
513,698 + GFF3645 0.76 -0.6
513,754 + GFF3645 0.79 -0.4
513,755 - GFF3645 0.79 +2.2
513,755 - GFF3645 0.79 +0.8
513,755 - GFF3645 0.79 +1.0
513,755 - GFF3645 0.79 -0.6
513,847 + GFF3645 0.84 +1.1
513,847 + GFF3645 0.84 +1.3
513,847 + GFF3645 0.84 +1.0
513,847 + GFF3645 0.84 -1.0
513,847 + GFF3645 0.84 -1.4
513,847 + GFF3645 0.84 +1.4
513,967 + GFF3645 0.90 +0.1
513,967 + GFF3645 0.90 +1.2
513,982 + -0.4
513,982 + +0.6
513,982 + -0.4
513,983 - -1.3
513,983 - -1.2
514,012 + -0.3
514,012 + +0.4
514,012 + +0.3
514,013 - -0.4
514,372 + GFF3646 0.10 -1.1
514,372 + GFF3646 0.10 -0.6
514,372 + GFF3646 0.10 -0.7
514,372 + GFF3646 0.10 +0.0
514,373 - GFF3646 0.10 +1.1
514,373 - GFF3646 0.10 -0.6
514,387 + GFF3646 0.11 +0.5
514,387 + GFF3646 0.11 +0.0
514,387 + GFF3646 0.11 +0.3
514,387 + GFF3646 0.11 +0.2
514,387 + GFF3646 0.11 -1.1
514,387 + GFF3646 0.11 +1.3
514,387 + GFF3646 0.11 -0.7
514,834 + GFF3646 0.37 -3.1
514,835 - GFF3646 0.37 -1.7
514,835 - GFF3646 0.37 +0.0
514,921 + GFF3646 0.42 +0.4
514,921 + GFF3646 0.42 -0.5
514,921 + GFF3646 0.42 +0.9
514,921 + GFF3646 0.42 +0.2
514,921 + GFF3646 0.42 +0.7
514,922 - GFF3646 0.42 -0.5
514,922 - GFF3646 0.42 -0.2
514,922 - GFF3646 0.42 -0.3

Or see this region's nucleotide sequence