Strain Fitness in Xanthobacter sp. DMC5 around GFF3626

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3623 and GFF3624 overlap by 4 nucleotidesGFF3624 and GFF3625 are separated by 30 nucleotidesGFF3625 and GFF3626 are separated by 43 nucleotidesGFF3626 and GFF3627 are separated by 179 nucleotides GFF3623 - Fe(3+) dicitrate transport system permease protein FecD, at 489,335 to 490,330 GFF3623 GFF3624 - Hemin import ATP-binding protein HmuV, at 490,327 to 490,644 GFF3624 GFF3625 - Fe(3+) dicitrate transport ATP-binding protein FecE, at 490,675 to 491,067 GFF3625 GFF3626 - hypothetical protein, at 491,111 to 491,827 GFF3626 GFF3627 - HTH-type transcriptional regulator GltC, at 492,007 to 492,921 GFF3627 Position (kb) 491 492Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 490.113 kb on + strand, within GFF3623at 490.113 kb on + strand, within GFF3623at 490.113 kb on + strand, within GFF3623at 490.114 kb on - strand, within GFF3623at 490.114 kb on - strand, within GFF3623at 490.507 kb on + strand, within GFF3624at 490.564 kb on + strand, within GFF3624at 490.564 kb on + strand, within GFF3624at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.719 kb on + strand, within GFF3625at 490.720 kb on - strand, within GFF3625at 490.957 kb on - strand, within GFF3625at 491.146 kb on + strandat 491.260 kb on - strand, within GFF3626at 491.318 kb on + strand, within GFF3626at 491.318 kb on + strand, within GFF3626at 491.417 kb on + strand, within GFF3626at 491.511 kb on + strand, within GFF3626at 491.511 kb on + strand, within GFF3626at 491.511 kb on + strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.512 kb on - strand, within GFF3626at 491.702 kb on - strand, within GFF3626at 491.821 kb on + strandat 491.821 kb on + strandat 491.822 kb on - strandat 491.822 kb on - strandat 491.822 kb on - strandat 491.822 kb on - strandat 491.844 kb on + strandat 491.844 kb on + strandat 491.844 kb on + strandat 491.845 kb on - strandat 491.845 kb on - strandat 491.845 kb on - strandat 491.845 kb on - strandat 491.845 kb on - strandat 491.845 kb on - strandat 491.845 kb on - strandat 491.888 kb on + strandat 491.902 kb on + strandat 491.927 kb on + strandat 492.135 kb on - strand, within GFF3627at 492.167 kb on + strand, within GFF3627at 492.172 kb on - strand, within GFF3627at 492.173 kb on + strand, within GFF3627at 492.201 kb on + strand, within GFF3627at 492.250 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.302 kb on - strand, within GFF3627at 492.303 kb on + strand, within GFF3627at 492.304 kb on - strand, within GFF3627at 492.305 kb on + strand, within GFF3627at 492.306 kb on - strand, within GFF3627at 492.344 kb on + strand, within GFF3627at 492.365 kb on - strand, within GFF3627at 492.365 kb on - strand, within GFF3627at 492.423 kb on + strand, within GFF3627at 492.423 kb on + strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.424 kb on - strand, within GFF3627at 492.427 kb on - strand, within GFF3627at 492.427 kb on - strand, within GFF3627at 492.433 kb on - strand, within GFF3627at 492.465 kb on - strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.606 kb on + strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.607 kb on - strand, within GFF3627at 492.612 kb on + strand, within GFF3627at 492.612 kb on + strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.613 kb on - strand, within GFF3627at 492.640 kb on + strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.641 kb on - strand, within GFF3627at 492.706 kb on + strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.707 kb on - strand, within GFF3627at 492.717 kb on + strand, within GFF3627at 492.717 kb on + strand, within GFF3627at 492.718 kb on - strand, within GFF3627at 492.718 kb on - strand, within GFF3627at 492.754 kb on - strand, within GFF3627at 492.793 kb on + strand, within GFF3627at 492.793 kb on + strand, within GFF3627at 492.794 kb on - strand, within GFF3627at 492.794 kb on - strand, within GFF3627at 492.803 kb on + strand, within GFF3627at 492.803 kb on + strand, within GFF3627at 492.804 kb on - strand, within GFF3627

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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490,113 + GFF3623 0.78 +0.8
490,113 + GFF3623 0.78 +0.0
490,113 + GFF3623 0.78 +0.0
490,114 - GFF3623 0.78 -1.8
490,114 - GFF3623 0.78 +0.8
490,507 + GFF3624 0.57 +0.2
490,564 + GFF3624 0.75 +0.1
490,564 + GFF3624 0.75 +0.5
490,719 + GFF3625 0.11 -0.2
490,719 + GFF3625 0.11 +0.3
490,719 + GFF3625 0.11 -1.3
490,719 + GFF3625 0.11 -0.5
490,719 + GFF3625 0.11 +0.0
490,719 + GFF3625 0.11 -0.9
490,719 + GFF3625 0.11 +1.3
490,720 - GFF3625 0.11 +0.1
490,957 - GFF3625 0.72 +1.4
491,146 + +0.7
491,260 - GFF3626 0.21 +0.4
491,318 + GFF3626 0.29 -0.2
491,318 + GFF3626 0.29 -0.3
491,417 + GFF3626 0.43 -0.0
491,511 + GFF3626 0.56 +0.1
491,511 + GFF3626 0.56 +0.2
491,511 + GFF3626 0.56 -1.0
491,512 - GFF3626 0.56 +0.0
491,512 - GFF3626 0.56 -0.5
491,512 - GFF3626 0.56 +0.4
491,512 - GFF3626 0.56 +0.4
491,512 - GFF3626 0.56 +0.7
491,512 - GFF3626 0.56 +0.7
491,512 - GFF3626 0.56 -0.5
491,702 - GFF3626 0.82 -2.8
491,821 + -1.3
491,821 + +0.0
491,822 - +0.9
491,822 - +1.5
491,822 - -0.7
491,822 - -0.1
491,844 + -0.7
491,844 + +2.2
491,844 + -0.3
491,845 - -0.1
491,845 - +0.0
491,845 - +0.3
491,845 - -0.4
491,845 - +0.0
491,845 - +0.3
491,845 - -0.1
491,888 + -0.8
491,902 + +1.0
491,927 + +0.3
492,135 - GFF3627 0.14 -0.9
492,167 + GFF3627 0.17 -0.5
492,172 - GFF3627 0.18 -0.3
492,173 + GFF3627 0.18 +0.3
492,201 + GFF3627 0.21 -0.7
492,250 - GFF3627 0.27 +1.2
492,302 - GFF3627 0.32 -1.4
492,302 - GFF3627 0.32 -0.8
492,302 - GFF3627 0.32 +0.5
492,302 - GFF3627 0.32 -0.5
492,302 - GFF3627 0.32 -0.2
492,302 - GFF3627 0.32 -0.9
492,303 + GFF3627 0.32 -1.4
492,304 - GFF3627 0.32 -0.3
492,305 + GFF3627 0.33 +0.8
492,306 - GFF3627 0.33 +0.7
492,344 + GFF3627 0.37 -0.4
492,365 - GFF3627 0.39 -0.5
492,365 - GFF3627 0.39 +0.7
492,423 + GFF3627 0.45 +0.4
492,423 + GFF3627 0.45 -0.2
492,424 - GFF3627 0.46 +1.0
492,424 - GFF3627 0.46 +0.4
492,424 - GFF3627 0.46 -0.6
492,427 - GFF3627 0.46 -0.6
492,427 - GFF3627 0.46 -0.2
492,433 - GFF3627 0.47 -0.4
492,465 - GFF3627 0.50 +0.6
492,606 + GFF3627 0.65 +0.0
492,606 + GFF3627 0.65 -0.8
492,606 + GFF3627 0.65 -0.2
492,606 + GFF3627 0.65 +0.1
492,606 + GFF3627 0.65 +1.0
492,607 - GFF3627 0.66 -0.9
492,607 - GFF3627 0.66 +0.8
492,607 - GFF3627 0.66 +0.9
492,612 + GFF3627 0.66 -0.3
492,612 + GFF3627 0.66 +0.4
492,613 - GFF3627 0.66 -1.0
492,613 - GFF3627 0.66 +0.1
492,613 - GFF3627 0.66 +0.1
492,640 + GFF3627 0.69 -0.0
492,641 - GFF3627 0.69 +0.6
492,641 - GFF3627 0.69 +0.6
492,641 - GFF3627 0.69 +1.6
492,706 + GFF3627 0.76 -0.8
492,707 - GFF3627 0.77 +0.3
492,707 - GFF3627 0.77 +1.4
492,707 - GFF3627 0.77 -0.1
492,707 - GFF3627 0.77 +0.2
492,707 - GFF3627 0.77 +0.4
492,707 - GFF3627 0.77 +1.0
492,717 + GFF3627 0.78 +0.2
492,717 + GFF3627 0.78 +0.6
492,718 - GFF3627 0.78 +0.0
492,718 - GFF3627 0.78 +0.3
492,754 - GFF3627 0.82 +2.0
492,793 + GFF3627 0.86 +0.6
492,793 + GFF3627 0.86 -0.2
492,794 - GFF3627 0.86 +0.8
492,794 - GFF3627 0.86 +0.3
492,803 + GFF3627 0.87 +0.3
492,803 + GFF3627 0.87 -0.3
492,804 - GFF3627 0.87 -0.4

Or see this region's nucleotide sequence