Strain Fitness in Xanthobacter sp. DMC5 around GFF3618

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3617 and GFF3618 are separated by 13 nucleotidesGFF3618 and GFF3619 are separated by 2 nucleotidesGFF3619 and GFF3620 overlap by 11 nucleotides GFF3617 - hypothetical protein, at 481,663 to 482,781 GFF3617 GFF3618 - hypothetical protein, at 482,795 to 484,603 GFF3618 GFF3619 - hypothetical protein, at 484,606 to 485,007 GFF3619 GFF3620 - hypothetical protein, at 484,997 to 485,215 GFF3620 Position (kb) 482 483 484 485Strain fitness (log2 ratio) -2 -1 0 1 2at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.838 kb on + strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.839 kb on - strand, within GFF3617at 481.842 kb on + strand, within GFF3617at 481.842 kb on + strand, within GFF3617at 481.843 kb on - strand, within GFF3617at 481.843 kb on - strand, within GFF3617at 481.881 kb on - strand, within GFF3617at 481.881 kb on - strand, within GFF3617at 481.881 kb on - strand, within GFF3617at 482.066 kb on + strand, within GFF3617at 482.066 kb on + strand, within GFF3617at 482.067 kb on - strand, within GFF3617at 482.067 kb on - strand, within GFF3617at 482.067 kb on - strand, within GFF3617at 482.100 kb on - strand, within GFF3617at 482.145 kb on + strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.526 kb on - strand, within GFF3617at 482.676 kb on - strandat 482.676 kb on - strandat 482.699 kb on + strandat 482.699 kb on + strandat 482.699 kb on + strandat 482.700 kb on - strandat 482.700 kb on - strandat 482.700 kb on - strandat 482.812 kb on - strandat 482.812 kb on - strandat 482.926 kb on + strandat 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.174 kb on + strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.175 kb on - strand, within GFF3618at 483.192 kb on - strand, within GFF3618at 483.248 kb on - strand, within GFF3618at 483.248 kb on - strand, within GFF3618at 483.389 kb on + strand, within GFF3618at 483.426 kb on + strand, within GFF3618at 483.426 kb on + strand, within GFF3618at 483.427 kb on - strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.510 kb on + strand, within GFF3618at 483.714 kb on + strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.757 kb on - strand, within GFF3618at 483.908 kb on - strand, within GFF3618at 483.908 kb on - strand, within GFF3618at 483.910 kb on - strand, within GFF3618at 483.910 kb on - strand, within GFF3618at 483.910 kb on - strand, within GFF3618at 483.910 kb on - strand, within GFF3618at 484.026 kb on + strand, within GFF3618at 484.026 kb on + strand, within GFF3618at 484.062 kb on + strand, within GFF3618at 484.062 kb on + strand, within GFF3618at 484.062 kb on + strand, within GFF3618at 484.062 kb on + strand, within GFF3618at 484.062 kb on + strand, within GFF3618at 484.062 kb on + strand, within GFF3618at 484.063 kb on - strand, within GFF3618at 484.063 kb on - strand, within GFF3618at 484.063 kb on - strand, within GFF3618at 484.063 kb on - strand, within GFF3618at 484.098 kb on + strand, within GFF3618at 484.098 kb on + strand, within GFF3618at 484.098 kb on + strand, within GFF3618at 484.098 kb on + strand, within GFF3618at 484.099 kb on - strand, within GFF3618at 484.099 kb on - strand, within GFF3618at 484.099 kb on - strand, within GFF3618at 484.099 kb on - strand, within GFF3618at 484.101 kb on + strand, within GFF3618at 484.101 kb on + strand, within GFF3618at 484.101 kb on + strand, within GFF3618at 484.101 kb on + strand, within GFF3618at 484.101 kb on + strand, within GFF3618at 484.102 kb on - strand, within GFF3618at 484.102 kb on - strand, within GFF3618at 484.102 kb on - strand, within GFF3618at 484.102 kb on - strand, within GFF3618at 484.102 kb on - strand, within GFF3618at 484.293 kb on + strand, within GFF3618at 484.293 kb on + strand, within GFF3618at 484.616 kb on - strandat 484.667 kb on + strand, within GFF3619at 484.800 kb on - strand, within GFF3619at 485.020 kb on + strand, within GFF3620at 485.020 kb on + strand, within GFF3620at 485.021 kb on - strand, within GFF3620at 485.021 kb on - strand, within GFF3620at 485.021 kb on - strand, within GFF3620at 485.021 kb on - strand, within GFF3620at 485.021 kb on - strand, within GFF3620at 485.029 kb on + strand, within GFF3620at 485.029 kb on + strand, within GFF3620at 485.030 kb on - strand, within GFF3620at 485.030 kb on - strand, within GFF3620at 485.079 kb on + strand, within GFF3620at 485.152 kb on + strand, within GFF3620at 485.166 kb on + strand, within GFF3620at 485.166 kb on + strand, within GFF3620at 485.215 kb on + strandat 485.215 kb on + strandat 485.231 kb on - strandat 485.237 kb on + strandat 485.237 kb on + strandat 485.237 kb on + strandat 485.238 kb on - strandat 485.238 kb on - strandat 485.238 kb on - strandat 485.354 kb on - strandat 485.373 kb on + strandat 485.374 kb on - strandat 485.374 kb on - strandat 485.399 kb on + strandat 485.430 kb on + strandat 485.449 kb on + strandat 485.449 kb on + strandat 485.468 kb on - strandat 485.522 kb on - strandat 485.543 kb on - strandat 485.586 kb on + strandat 485.601 kb on + strandat 485.601 kb on + strandat 485.602 kb on - strandat 485.602 kb on - strandat 485.603 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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481,838 + GFF3617 0.16 -0.6
481,838 + GFF3617 0.16 -2.1
481,838 + GFF3617 0.16 -1.8
481,838 + GFF3617 0.16 -1.1
481,838 + GFF3617 0.16 +1.3
481,838 + GFF3617 0.16 -0.5
481,838 + GFF3617 0.16 +0.5
481,839 - GFF3617 0.16 -0.5
481,839 - GFF3617 0.16 -0.5
481,839 - GFF3617 0.16 +0.6
481,839 - GFF3617 0.16 -0.5
481,839 - GFF3617 0.16 -0.6
481,839 - GFF3617 0.16 +0.0
481,839 - GFF3617 0.16 +0.3
481,839 - GFF3617 0.16 +1.0
481,839 - GFF3617 0.16 +0.1
481,842 + GFF3617 0.16 +0.8
481,842 + GFF3617 0.16 +0.3
481,843 - GFF3617 0.16 -1.2
481,843 - GFF3617 0.16 +0.4
481,881 - GFF3617 0.19 -0.3
481,881 - GFF3617 0.19 -1.6
481,881 - GFF3617 0.19 +0.8
482,066 + GFF3617 0.36 -0.3
482,066 + GFF3617 0.36 -0.3
482,067 - GFF3617 0.36 +0.2
482,067 - GFF3617 0.36 -0.1
482,067 - GFF3617 0.36 +1.0
482,100 - GFF3617 0.39 -0.7
482,145 + GFF3617 0.43 -0.1
482,526 - GFF3617 0.77 -0.7
482,526 - GFF3617 0.77 -0.3
482,526 - GFF3617 0.77 +0.3
482,526 - GFF3617 0.77 +0.3
482,526 - GFF3617 0.77 +0.2
482,526 - GFF3617 0.77 +0.1
482,526 - GFF3617 0.77 +0.3
482,526 - GFF3617 0.77 +0.3
482,526 - GFF3617 0.77 +0.0
482,526 - GFF3617 0.77 -0.2
482,676 - +0.8
482,676 - -0.5
482,699 + +1.0
482,699 + -1.9
482,699 + +0.6
482,700 - +0.6
482,700 - +0.2
482,700 - +0.3
482,812 - +0.6
482,812 - +0.7
482,926 + +0.8
483,174 + GFF3618 0.21 -0.3
483,174 + GFF3618 0.21 -0.1
483,174 + GFF3618 0.21 -0.9
483,174 + GFF3618 0.21 -1.3
483,174 + GFF3618 0.21 -0.8
483,174 + GFF3618 0.21 +0.1
483,174 + GFF3618 0.21 -0.2
483,174 + GFF3618 0.21 -1.8
483,174 + GFF3618 0.21 -0.4
483,174 + GFF3618 0.21 -0.2
483,174 + GFF3618 0.21 -0.9
483,174 + GFF3618 0.21 -1.4
483,175 - GFF3618 0.21 +0.8
483,175 - GFF3618 0.21 +1.8
483,175 - GFF3618 0.21 +1.0
483,175 - GFF3618 0.21 -1.3
483,175 - GFF3618 0.21 -0.3
483,175 - GFF3618 0.21 -0.5
483,175 - GFF3618 0.21 -0.5
483,175 - GFF3618 0.21 -0.5
483,175 - GFF3618 0.21 -0.4
483,175 - GFF3618 0.21 -0.5
483,175 - GFF3618 0.21 -0.1
483,175 - GFF3618 0.21 -0.1
483,175 - GFF3618 0.21 -1.0
483,175 - GFF3618 0.21 -0.2
483,175 - GFF3618 0.21 +0.1
483,175 - GFF3618 0.21 -0.3
483,192 - GFF3618 0.22 +0.7
483,248 - GFF3618 0.25 +0.0
483,248 - GFF3618 0.25 -0.7
483,389 + GFF3618 0.33 +0.1
483,426 + GFF3618 0.35 -0.6
483,426 + GFF3618 0.35 -0.2
483,427 - GFF3618 0.35 +0.2
483,510 + GFF3618 0.40 +0.4
483,510 + GFF3618 0.40 -0.3
483,510 + GFF3618 0.40 +0.6
483,510 + GFF3618 0.40 +0.8
483,510 + GFF3618 0.40 +0.1
483,510 + GFF3618 0.40 +0.5
483,714 + GFF3618 0.51 -0.1
483,757 - GFF3618 0.53 +0.1
483,757 - GFF3618 0.53 -0.1
483,757 - GFF3618 0.53 +0.7
483,757 - GFF3618 0.53 -0.6
483,757 - GFF3618 0.53 +0.0
483,757 - GFF3618 0.53 -0.9
483,908 - GFF3618 0.62 -0.9
483,908 - GFF3618 0.62 -0.3
483,910 - GFF3618 0.62 -0.1
483,910 - GFF3618 0.62 -0.2
483,910 - GFF3618 0.62 +0.1
483,910 - GFF3618 0.62 -1.0
484,026 + GFF3618 0.68 -0.3
484,026 + GFF3618 0.68 +1.1
484,062 + GFF3618 0.70 -0.9
484,062 + GFF3618 0.70 +0.0
484,062 + GFF3618 0.70 -0.6
484,062 + GFF3618 0.70 +0.1
484,062 + GFF3618 0.70 -1.0
484,062 + GFF3618 0.70 +0.7
484,063 - GFF3618 0.70 +0.8
484,063 - GFF3618 0.70 +0.8
484,063 - GFF3618 0.70 -1.3
484,063 - GFF3618 0.70 -0.0
484,098 + GFF3618 0.72 +0.7
484,098 + GFF3618 0.72 -0.6
484,098 + GFF3618 0.72 -0.4
484,098 + GFF3618 0.72 +0.2
484,099 - GFF3618 0.72 -1.3
484,099 - GFF3618 0.72 +0.8
484,099 - GFF3618 0.72 +0.1
484,099 - GFF3618 0.72 +0.1
484,101 + GFF3618 0.72 -0.6
484,101 + GFF3618 0.72 +0.2
484,101 + GFF3618 0.72 +0.7
484,101 + GFF3618 0.72 -0.1
484,101 + GFF3618 0.72 -0.1
484,102 - GFF3618 0.72 -0.0
484,102 - GFF3618 0.72 -0.2
484,102 - GFF3618 0.72 -1.0
484,102 - GFF3618 0.72 +0.8
484,102 - GFF3618 0.72 -0.2
484,293 + GFF3618 0.83 -0.4
484,293 + GFF3618 0.83 +0.8
484,616 - -0.7
484,667 + GFF3619 0.15 -0.2
484,800 - GFF3619 0.48 +1.1
485,020 + GFF3620 0.11 +1.2
485,020 + GFF3620 0.11 +0.3
485,021 - GFF3620 0.11 +1.5
485,021 - GFF3620 0.11 -1.9
485,021 - GFF3620 0.11 -0.5
485,021 - GFF3620 0.11 -0.9
485,021 - GFF3620 0.11 -0.2
485,029 + GFF3620 0.15 +0.4
485,029 + GFF3620 0.15 -0.4
485,030 - GFF3620 0.15 -0.8
485,030 - GFF3620 0.15 -0.2
485,079 + GFF3620 0.37 -1.0
485,152 + GFF3620 0.71 -0.1
485,166 + GFF3620 0.77 +0.3
485,166 + GFF3620 0.77 -0.2
485,215 + -1.5
485,215 + +0.8
485,231 - +0.6
485,237 + +0.4
485,237 + -0.5
485,237 + +0.8
485,238 - -0.2
485,238 - -1.8
485,238 - +0.3
485,354 - +0.6
485,373 + +0.2
485,374 - +0.6
485,374 - +0.4
485,399 + -0.2
485,430 + +0.3
485,449 + +0.2
485,449 + +0.1
485,468 - +0.3
485,522 - +0.1
485,543 - +1.7
485,586 + -1.1
485,601 + -1.4
485,601 + -1.0
485,602 - -0.6
485,602 - +0.4
485,603 + -0.6

Or see this region's nucleotide sequence