Strain Fitness in Xanthobacter sp. DMC5 around GFF3613

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3612 and GFF3613 overlap by 14 nucleotidesGFF3613 and GFF3614 overlap by 4 nucleotides GFF3612 - hypothetical protein, at 472,348 to 475,077 GFF3612 GFF3613 - hypothetical protein, at 475,064 to 475,723 GFF3613 GFF3614 - ATP-dependent DNA helicase Rep, at 475,720 to 477,159 GFF3614 Position (kb) 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 474.103 kb on + strand, within GFF3612at 474.103 kb on + strand, within GFF3612at 474.103 kb on + strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.104 kb on - strand, within GFF3612at 474.187 kb on + strand, within GFF3612at 474.187 kb on + strand, within GFF3612at 474.187 kb on + strand, within GFF3612at 474.188 kb on - strand, within GFF3612at 474.188 kb on - strand, within GFF3612at 474.188 kb on - strand, within GFF3612at 474.188 kb on - strand, within GFF3612at 474.188 kb on - strand, within GFF3612at 474.287 kb on + strand, within GFF3612at 474.287 kb on + strand, within GFF3612at 474.288 kb on - strand, within GFF3612at 474.288 kb on - strand, within GFF3612at 474.288 kb on - strand, within GFF3612at 474.288 kb on - strand, within GFF3612at 474.290 kb on + strand, within GFF3612at 474.290 kb on + strand, within GFF3612at 474.290 kb on + strand, within GFF3612at 474.291 kb on - strand, within GFF3612at 474.291 kb on - strand, within GFF3612at 474.291 kb on - strand, within GFF3612at 474.306 kb on + strand, within GFF3612at 474.342 kb on + strand, within GFF3612at 474.343 kb on - strand, within GFF3612at 474.373 kb on + strand, within GFF3612at 474.373 kb on + strand, within GFF3612at 474.374 kb on - strand, within GFF3612at 474.374 kb on - strand, within GFF3612at 474.374 kb on - strand, within GFF3612at 474.424 kb on + strand, within GFF3612at 474.424 kb on + strand, within GFF3612at 474.424 kb on + strand, within GFF3612at 474.424 kb on + strand, within GFF3612at 474.425 kb on - strand, within GFF3612at 474.425 kb on - strand, within GFF3612at 474.425 kb on - strand, within GFF3612at 474.689 kb on + strand, within GFF3612at 474.759 kb on + strand, within GFF3612at 474.759 kb on + strand, within GFF3612at 474.759 kb on + strand, within GFF3612at 474.759 kb on + strand, within GFF3612at 474.759 kb on + strand, within GFF3612at 474.759 kb on + strand, within GFF3612at 474.760 kb on - strand, within GFF3612at 474.760 kb on - strand, within GFF3612at 474.760 kb on - strand, within GFF3612at 474.760 kb on - strand, within GFF3612at 474.858 kb on + strandat 474.982 kb on + strandat 474.982 kb on + strandat 474.982 kb on + strandat 474.983 kb on - strandat 474.983 kb on - strandat 474.998 kb on + strandat 474.998 kb on + strandat 475.010 kb on + strandat 475.010 kb on + strandat 475.010 kb on + strandat 475.011 kb on - strandat 475.011 kb on - strandat 475.011 kb on - strandat 475.088 kb on + strandat 475.088 kb on + strandat 475.088 kb on + strandat 475.129 kb on + strandat 475.129 kb on + strandat 475.129 kb on + strandat 475.129 kb on + strandat 475.130 kb on - strand, within GFF3613at 475.130 kb on - strand, within GFF3613at 475.130 kb on - strand, within GFF3613at 475.132 kb on + strand, within GFF3613at 475.132 kb on + strand, within GFF3613at 475.133 kb on - strand, within GFF3613at 475.147 kb on - strand, within GFF3613at 475.147 kb on - strand, within GFF3613at 475.161 kb on + strand, within GFF3613at 475.161 kb on + strand, within GFF3613at 475.162 kb on - strand, within GFF3613at 475.202 kb on - strand, within GFF3613at 475.263 kb on + strand, within GFF3613at 475.263 kb on + strand, within GFF3613at 475.263 kb on + strand, within GFF3613at 475.263 kb on + strand, within GFF3613at 475.263 kb on + strand, within GFF3613at 475.263 kb on + strand, within GFF3613at 475.264 kb on - strand, within GFF3613at 475.264 kb on - strand, within GFF3613at 475.277 kb on + strand, within GFF3613at 475.278 kb on - strand, within GFF3613at 475.384 kb on + strand, within GFF3613at 475.385 kb on - strand, within GFF3613at 475.385 kb on - strand, within GFF3613at 475.407 kb on + strand, within GFF3613at 475.494 kb on + strand, within GFF3613at 475.494 kb on + strand, within GFF3613at 475.494 kb on + strand, within GFF3613at 475.495 kb on - strand, within GFF3613at 475.495 kb on - strand, within GFF3613at 475.495 kb on - strand, within GFF3613at 475.515 kb on + strand, within GFF3613at 475.515 kb on + strand, within GFF3613at 475.516 kb on - strand, within GFF3613at 475.516 kb on - strand, within GFF3613at 475.691 kb on - strandat 475.723 kb on + strandat 475.723 kb on + strandat 475.724 kb on - strandat 475.724 kb on - strandat 475.724 kb on - strandat 475.724 kb on - strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.768 kb on + strandat 475.769 kb on - strandat 475.769 kb on - strandat 475.769 kb on - strandat 475.769 kb on - strandat 475.769 kb on - strandat 475.799 kb on + strandat 475.799 kb on + strandat 475.799 kb on + strandat 475.799 kb on + strandat 475.800 kb on - strandat 475.800 kb on - strandat 475.800 kb on - strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.848 kb on + strandat 475.849 kb on - strandat 475.849 kb on - strandat 475.849 kb on - strandat 475.849 kb on - strandat 475.860 kb on + strandat 475.860 kb on + strandat 475.860 kb on + strandat 475.926 kb on + strand, within GFF3614at 475.926 kb on + strand, within GFF3614at 475.927 kb on - strand, within GFF3614at 475.954 kb on + strand, within GFF3614at 475.955 kb on - strand, within GFF3614at 476.015 kb on + strand, within GFF3614at 476.016 kb on - strand, within GFF3614at 476.016 kb on - strand, within GFF3614at 476.052 kb on + strand, within GFF3614at 476.110 kb on + strand, within GFF3614at 476.110 kb on + strand, within GFF3614at 476.111 kb on - strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.248 kb on + strand, within GFF3614at 476.249 kb on - strand, within GFF3614at 476.249 kb on - strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.720 kb on + strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614at 476.721 kb on - strand, within GFF3614

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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474,103 + GFF3612 0.64 +1.4
474,103 + GFF3612 0.64 +0.3
474,103 + GFF3612 0.64 +0.3
474,104 - GFF3612 0.64 +0.4
474,104 - GFF3612 0.64 +0.7
474,104 - GFF3612 0.64 +1.6
474,104 - GFF3612 0.64 -0.6
474,104 - GFF3612 0.64 -0.2
474,104 - GFF3612 0.64 +0.2
474,104 - GFF3612 0.64 +0.9
474,104 - GFF3612 0.64 +0.0
474,187 + GFF3612 0.67 -0.6
474,187 + GFF3612 0.67 +0.9
474,187 + GFF3612 0.67 +0.5
474,188 - GFF3612 0.67 -2.0
474,188 - GFF3612 0.67 +1.3
474,188 - GFF3612 0.67 -0.2
474,188 - GFF3612 0.67 +0.8
474,188 - GFF3612 0.67 +0.8
474,287 + GFF3612 0.71 +0.2
474,287 + GFF3612 0.71 +0.3
474,288 - GFF3612 0.71 -0.6
474,288 - GFF3612 0.71 -0.2
474,288 - GFF3612 0.71 -0.6
474,288 - GFF3612 0.71 +0.1
474,290 + GFF3612 0.71 -0.6
474,290 + GFF3612 0.71 +0.4
474,290 + GFF3612 0.71 -1.2
474,291 - GFF3612 0.71 +0.3
474,291 - GFF3612 0.71 +0.4
474,291 - GFF3612 0.71 +0.1
474,306 + GFF3612 0.72 +0.7
474,342 + GFF3612 0.73 -0.1
474,343 - GFF3612 0.73 +0.2
474,373 + GFF3612 0.74 +0.6
474,373 + GFF3612 0.74 +0.2
474,374 - GFF3612 0.74 -0.4
474,374 - GFF3612 0.74 +0.8
474,374 - GFF3612 0.74 -0.7
474,424 + GFF3612 0.76 +0.8
474,424 + GFF3612 0.76 -1.6
474,424 + GFF3612 0.76 +0.5
474,424 + GFF3612 0.76 +0.3
474,425 - GFF3612 0.76 +0.1
474,425 - GFF3612 0.76 -0.6
474,425 - GFF3612 0.76 +2.0
474,689 + GFF3612 0.86 +0.3
474,759 + GFF3612 0.88 -0.1
474,759 + GFF3612 0.88 +0.0
474,759 + GFF3612 0.88 +0.6
474,759 + GFF3612 0.88 +0.0
474,759 + GFF3612 0.88 +0.2
474,759 + GFF3612 0.88 +0.0
474,760 - GFF3612 0.88 -0.1
474,760 - GFF3612 0.88 -0.3
474,760 - GFF3612 0.88 -0.5
474,760 - GFF3612 0.88 +0.0
474,858 + +1.7
474,982 + -1.0
474,982 + -0.5
474,982 + +0.9
474,983 - +0.3
474,983 - +0.4
474,998 + -0.2
474,998 + -1.0
475,010 + -0.3
475,010 + -1.3
475,010 + +0.0
475,011 - +0.8
475,011 - +1.0
475,011 - +0.2
475,088 + +0.5
475,088 + +0.5
475,088 + +0.2
475,129 + +0.8
475,129 + -0.4
475,129 + +0.5
475,129 + +1.3
475,130 - GFF3613 0.10 -0.8
475,130 - GFF3613 0.10 -1.0
475,130 - GFF3613 0.10 -0.1
475,132 + GFF3613 0.10 +1.3
475,132 + GFF3613 0.10 -0.1
475,133 - GFF3613 0.10 -0.9
475,147 - GFF3613 0.13 -0.8
475,147 - GFF3613 0.13 -0.3
475,161 + GFF3613 0.15 +0.0
475,161 + GFF3613 0.15 -0.2
475,162 - GFF3613 0.15 +1.4
475,202 - GFF3613 0.21 -0.7
475,263 + GFF3613 0.30 -0.8
475,263 + GFF3613 0.30 +0.3
475,263 + GFF3613 0.30 -0.2
475,263 + GFF3613 0.30 +0.0
475,263 + GFF3613 0.30 +0.3
475,263 + GFF3613 0.30 -1.6
475,264 - GFF3613 0.30 -0.1
475,264 - GFF3613 0.30 -0.8
475,277 + GFF3613 0.32 -0.6
475,278 - GFF3613 0.32 +0.1
475,384 + GFF3613 0.48 -0.5
475,385 - GFF3613 0.49 +0.1
475,385 - GFF3613 0.49 -1.9
475,407 + GFF3613 0.52 +0.4
475,494 + GFF3613 0.65 +0.2
475,494 + GFF3613 0.65 -0.3
475,494 + GFF3613 0.65 +0.7
475,495 - GFF3613 0.65 +0.1
475,495 - GFF3613 0.65 +1.0
475,495 - GFF3613 0.65 +0.1
475,515 + GFF3613 0.68 +0.6
475,515 + GFF3613 0.68 +0.3
475,516 - GFF3613 0.68 -1.4
475,516 - GFF3613 0.68 -0.8
475,691 - -0.4
475,723 + -0.2
475,723 + +0.3
475,724 - +0.4
475,724 - +0.2
475,724 - +0.7
475,724 - +0.3
475,768 + -0.1
475,768 + +0.2
475,768 + +1.3
475,768 + -0.2
475,768 + -0.2
475,768 + -0.7
475,768 + -1.3
475,768 + -0.1
475,768 + +0.0
475,768 + +1.7
475,769 - -0.1
475,769 - +0.3
475,769 - +0.5
475,769 - +1.1
475,769 - +1.1
475,799 + -0.3
475,799 + -1.0
475,799 + -0.2
475,799 + -0.2
475,800 - -0.0
475,800 - +1.7
475,800 - +0.9
475,848 + +0.3
475,848 + -0.5
475,848 + +0.2
475,848 + -1.8
475,848 + -1.4
475,848 + -0.1
475,848 + +1.0
475,849 - -0.1
475,849 - -0.3
475,849 - -0.3
475,849 - +0.2
475,860 + -0.0
475,860 + -0.0
475,860 + -1.9
475,926 + GFF3614 0.14 -0.1
475,926 + GFF3614 0.14 +0.3
475,927 - GFF3614 0.14 -0.4
475,954 + GFF3614 0.16 -0.1
475,955 - GFF3614 0.16 -0.2
476,015 + GFF3614 0.20 -0.1
476,016 - GFF3614 0.21 -1.2
476,016 - GFF3614 0.21 +1.2
476,052 + GFF3614 0.23 -1.2
476,110 + GFF3614 0.27 +0.7
476,110 + GFF3614 0.27 -0.2
476,111 - GFF3614 0.27 -1.6
476,248 + GFF3614 0.37 +1.1
476,248 + GFF3614 0.37 -0.2
476,248 + GFF3614 0.37 -0.2
476,248 + GFF3614 0.37 -0.0
476,248 + GFF3614 0.37 -1.1
476,248 + GFF3614 0.37 -1.8
476,249 - GFF3614 0.37 +0.0
476,249 - GFF3614 0.37 -1.4
476,720 + GFF3614 0.69 -0.1
476,720 + GFF3614 0.69 -0.4
476,720 + GFF3614 0.69 -0.7
476,720 + GFF3614 0.69 -0.9
476,720 + GFF3614 0.69 +1.2
476,720 + GFF3614 0.69 -0.4
476,720 + GFF3614 0.69 +0.8
476,721 - GFF3614 0.70 -0.7
476,721 - GFF3614 0.70 -1.8
476,721 - GFF3614 0.70 +0.8
476,721 - GFF3614 0.70 -0.8
476,721 - GFF3614 0.70 -0.4

Or see this region's nucleotide sequence