Strain Fitness in Xanthobacter sp. DMC5 around GFF3554

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3553 and GFF3554 are separated by 27 nucleotidesGFF3554 and GFF3555 are separated by 120 nucleotides GFF3553 - hypothetical protein, at 408,788 to 409,777 GFF3553 GFF3554 - High-affinity branched-chain amino acid transport system permease protein LivH, at 409,805 to 410,686 GFF3554 GFF3555 - hypothetical protein, at 410,807 to 412,015 GFF3555 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1at 408.927 kb on + strand, within GFF3553at 408.927 kb on + strand, within GFF3553at 408.927 kb on + strand, within GFF3553at 408.928 kb on - strand, within GFF3553at 408.928 kb on - strand, within GFF3553at 409.128 kb on + strand, within GFF3553at 409.129 kb on - strand, within GFF3553at 409.221 kb on + strand, within GFF3553at 409.221 kb on + strand, within GFF3553at 409.222 kb on - strand, within GFF3553at 409.222 kb on - strand, within GFF3553at 409.222 kb on - strand, within GFF3553at 409.266 kb on + strand, within GFF3553at 409.266 kb on + strand, within GFF3553at 409.367 kb on + strand, within GFF3553at 409.539 kb on + strand, within GFF3553at 409.539 kb on + strand, within GFF3553at 409.540 kb on - strand, within GFF3553at 409.540 kb on - strand, within GFF3553at 409.540 kb on - strand, within GFF3553at 409.590 kb on + strand, within GFF3553at 409.591 kb on - strand, within GFF3553at 409.642 kb on - strand, within GFF3553at 409.660 kb on - strand, within GFF3553at 409.660 kb on - strand, within GFF3553at 409.893 kb on + strandat 409.894 kb on - strand, within GFF3554at 409.895 kb on + strand, within GFF3554at 410.034 kb on + strand, within GFF3554at 410.035 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.089 kb on - strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.166 kb on + strand, within GFF3554at 410.248 kb on - strand, within GFF3554at 410.248 kb on - strand, within GFF3554at 410.301 kb on + strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.302 kb on - strand, within GFF3554at 410.322 kb on + strand, within GFF3554at 410.383 kb on - strand, within GFF3554at 410.383 kb on - strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.400 kb on + strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.401 kb on - strand, within GFF3554at 410.402 kb on + strand, within GFF3554at 410.497 kb on - strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.535 kb on + strand, within GFF3554at 410.536 kb on - strand, within GFF3554at 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.610 kb on + strandat 410.611 kb on - strandat 410.623 kb on + strandat 410.749 kb on - strandat 410.889 kb on + strandat 410.889 kb on + strandat 410.889 kb on + strandat 410.889 kb on + strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.890 kb on - strandat 410.892 kb on + strandat 410.892 kb on + strandat 410.892 kb on + strandat 410.893 kb on - strandat 410.893 kb on - strandat 410.893 kb on - strandat 410.934 kb on + strand, within GFF3555at 410.934 kb on + strand, within GFF3555at 410.934 kb on + strand, within GFF3555at 410.935 kb on - strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.940 kb on + strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 410.941 kb on - strand, within GFF3555at 411.078 kb on + strand, within GFF3555at 411.078 kb on + strand, within GFF3555at 411.078 kb on + strand, within GFF3555at 411.079 kb on - strand, within GFF3555at 411.079 kb on - strand, within GFF3555at 411.096 kb on + strand, within GFF3555at 411.097 kb on - strand, within GFF3555at 411.196 kb on + strand, within GFF3555at 411.300 kb on + strand, within GFF3555at 411.300 kb on + strand, within GFF3555at 411.301 kb on - strand, within GFF3555at 411.505 kb on - strand, within GFF3555at 411.589 kb on - strand, within GFF3555at 411.589 kb on - strand, within GFF3555

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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408,927 + GFF3553 0.14 -0.5
408,927 + GFF3553 0.14 -0.4
408,927 + GFF3553 0.14 -1.0
408,928 - GFF3553 0.14 +0.4
408,928 - GFF3553 0.14 -0.2
409,128 + GFF3553 0.34 +0.1
409,129 - GFF3553 0.34 -0.2
409,221 + GFF3553 0.44 -1.4
409,221 + GFF3553 0.44 +1.0
409,222 - GFF3553 0.44 -0.4
409,222 - GFF3553 0.44 -2.1
409,222 - GFF3553 0.44 +0.6
409,266 + GFF3553 0.48 -0.6
409,266 + GFF3553 0.48 -0.1
409,367 + GFF3553 0.58 -0.0
409,539 + GFF3553 0.76 -0.5
409,539 + GFF3553 0.76 +1.0
409,540 - GFF3553 0.76 +0.8
409,540 - GFF3553 0.76 -1.2
409,540 - GFF3553 0.76 -0.6
409,590 + GFF3553 0.81 -1.5
409,591 - GFF3553 0.81 -0.3
409,642 - GFF3553 0.86 +1.0
409,660 - GFF3553 0.88 +0.2
409,660 - GFF3553 0.88 +0.2
409,893 + -0.2
409,894 - GFF3554 0.10 -2.2
409,895 + GFF3554 0.10 -0.2
410,034 + GFF3554 0.26 +1.6
410,035 - GFF3554 0.26 -0.7
410,089 - GFF3554 0.32 -0.3
410,089 - GFF3554 0.32 -0.4
410,089 - GFF3554 0.32 -0.9
410,089 - GFF3554 0.32 -0.5
410,166 + GFF3554 0.41 +0.5
410,166 + GFF3554 0.41 -1.1
410,166 + GFF3554 0.41 -0.5
410,166 + GFF3554 0.41 +0.1
410,166 + GFF3554 0.41 +0.9
410,248 - GFF3554 0.50 -0.3
410,248 - GFF3554 0.50 +0.2
410,301 + GFF3554 0.56 -0.3
410,302 - GFF3554 0.56 -0.3
410,302 - GFF3554 0.56 +0.7
410,302 - GFF3554 0.56 -1.1
410,322 + GFF3554 0.59 -0.0
410,383 - GFF3554 0.66 +1.6
410,383 - GFF3554 0.66 +1.2
410,400 + GFF3554 0.67 +0.1
410,400 + GFF3554 0.67 +0.5
410,400 + GFF3554 0.67 +0.6
410,400 + GFF3554 0.67 -0.9
410,400 + GFF3554 0.67 +0.1
410,400 + GFF3554 0.67 -0.3
410,400 + GFF3554 0.67 -1.5
410,400 + GFF3554 0.67 -2.2
410,400 + GFF3554 0.67 +0.4
410,400 + GFF3554 0.67 -0.8
410,400 + GFF3554 0.67 +0.2
410,401 - GFF3554 0.68 -0.1
410,401 - GFF3554 0.68 +0.4
410,401 - GFF3554 0.68 +0.1
410,401 - GFF3554 0.68 -0.5
410,401 - GFF3554 0.68 -0.1
410,402 + GFF3554 0.68 -0.1
410,497 - GFF3554 0.78 -0.3
410,535 + GFF3554 0.83 -0.9
410,535 + GFF3554 0.83 -0.4
410,535 + GFF3554 0.83 -0.6
410,535 + GFF3554 0.83 -0.4
410,536 - GFF3554 0.83 -0.3
410,610 + +0.5
410,610 + +0.3
410,610 + +0.6
410,610 + +0.6
410,610 + -0.3
410,611 - -0.4
410,623 + +0.8
410,749 - +0.4
410,889 + +0.7
410,889 + +0.3
410,889 + +0.6
410,889 + +0.4
410,890 - +0.7
410,890 - -0.2
410,890 - +0.4
410,890 - +0.1
410,890 - -0.7
410,892 + -0.5
410,892 + +0.3
410,892 + -0.1
410,893 - -1.4
410,893 - -2.2
410,893 - -0.0
410,934 + GFF3555 0.11 -0.3
410,934 + GFF3555 0.11 -1.2
410,934 + GFF3555 0.11 -0.0
410,935 - GFF3555 0.11 +1.0
410,940 + GFF3555 0.11 -0.2
410,940 + GFF3555 0.11 -0.3
410,940 + GFF3555 0.11 -1.6
410,940 + GFF3555 0.11 -0.3
410,940 + GFF3555 0.11 -0.5
410,940 + GFF3555 0.11 +0.6
410,940 + GFF3555 0.11 +1.3
410,940 + GFF3555 0.11 -0.4
410,940 + GFF3555 0.11 -1.4
410,941 - GFF3555 0.11 +0.4
410,941 - GFF3555 0.11 -1.0
410,941 - GFF3555 0.11 -1.3
410,941 - GFF3555 0.11 -0.2
410,941 - GFF3555 0.11 -0.5
410,941 - GFF3555 0.11 -1.6
410,941 - GFF3555 0.11 +0.0
410,941 - GFF3555 0.11 -0.7
410,941 - GFF3555 0.11 -0.0
411,078 + GFF3555 0.22 +0.7
411,078 + GFF3555 0.22 -0.3
411,078 + GFF3555 0.22 +0.2
411,079 - GFF3555 0.22 +0.5
411,079 - GFF3555 0.22 -1.1
411,096 + GFF3555 0.24 -1.3
411,097 - GFF3555 0.24 -0.3
411,196 + GFF3555 0.32 -1.2
411,300 + GFF3555 0.41 -0.9
411,300 + GFF3555 0.41 +0.5
411,301 - GFF3555 0.41 -0.6
411,505 - GFF3555 0.58 -0.3
411,589 - GFF3555 0.65 -0.4
411,589 - GFF3555 0.65 -0.5

Or see this region's nucleotide sequence