Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3543 and GFF3544 are separated by 94 nucleotides GFF3544 and GFF3545 overlap by 70 nucleotides
GFF3543 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 399,195 to 400,721
GFF3543
GFF3544 - hypothetical protein, at 400,816 to 401,115
GFF3544
GFF3545 - hypothetical protein, at 401,046 to 401,900
GFF3545
Position (kb) 400
401
402 Strain fitness (log2 ratio) -2
-1
0
1
2 at 400.095 kb on + strand, within GFF3543 at 400.095 kb on + strand, within GFF3543 at 400.392 kb on + strand, within GFF3543 at 400.393 kb on - strand, within GFF3543 at 400.524 kb on + strand, within GFF3543 at 400.524 kb on + strand, within GFF3543 at 400.524 kb on + strand, within GFF3543 at 400.524 kb on + strand, within GFF3543 at 400.525 kb on - strand, within GFF3543 at 400.525 kb on - strand, within GFF3543 at 400.525 kb on - strand, within GFF3543 at 400.625 kb on + strand at 400.626 kb on - strand at 400.960 kb on + strand, within GFF3544 at 400.961 kb on - strand, within GFF3544 at 401.047 kb on + strand at 401.048 kb on - strand at 401.216 kb on - strand, within GFF3545 at 401.431 kb on + strand, within GFF3545 at 401.431 kb on + strand, within GFF3545 at 401.432 kb on - strand, within GFF3545 at 401.450 kb on - strand, within GFF3545 at 401.668 kb on + strand, within GFF3545 at 401.668 kb on + strand, within GFF3545 at 401.668 kb on + strand, within GFF3545 at 401.669 kb on - strand, within GFF3545 at 401.725 kb on + strand, within GFF3545 at 401.725 kb on + strand, within GFF3545 at 401.726 kb on - strand, within GFF3545 at 401.726 kb on - strand, within GFF3545 at 401.734 kb on + strand, within GFF3545 at 401.735 kb on - strand, within GFF3545 at 401.735 kb on - strand, within GFF3545 at 401.804 kb on + strand, within GFF3545 at 401.804 kb on + strand, within GFF3545 at 401.805 kb on - strand, within GFF3545 at 401.994 kb on + strand at 402.020 kb on + strand at 402.021 kb on - strand at 402.021 kb on - strand at 402.034 kb on + strand at 402.034 kb on + strand at 402.035 kb on - strand at 402.035 kb on - strand at 402.035 kb on - strand at 402.035 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 400,095 + GFF3543 0.59 -0.7 400,095 + GFF3543 0.59 +0.0 400,392 + GFF3543 0.78 +0.0 400,393 - GFF3543 0.78 -1.7 400,524 + GFF3543 0.87 +0.6 400,524 + GFF3543 0.87 +0.2 400,524 + GFF3543 0.87 +0.0 400,524 + GFF3543 0.87 +0.4 400,525 - GFF3543 0.87 -0.7 400,525 - GFF3543 0.87 -1.0 400,525 - GFF3543 0.87 +1.0 400,625 + +0.4 400,626 - -0.1 400,960 + GFF3544 0.48 -0.2 400,961 - GFF3544 0.48 -1.8 401,047 + +0.0 401,048 - -0.6 401,216 - GFF3545 0.20 +0.0 401,431 + GFF3545 0.45 -0.4 401,431 + GFF3545 0.45 -0.2 401,432 - GFF3545 0.45 +0.4 401,450 - GFF3545 0.47 +0.4 401,668 + GFF3545 0.73 +0.6 401,668 + GFF3545 0.73 +0.4 401,668 + GFF3545 0.73 +1.2 401,669 - GFF3545 0.73 +1.8 401,725 + GFF3545 0.79 -0.4 401,725 + GFF3545 0.79 +0.6 401,726 - GFF3545 0.80 -0.2 401,726 - GFF3545 0.80 -1.1 401,734 + GFF3545 0.80 -0.7 401,735 - GFF3545 0.81 +0.1 401,735 - GFF3545 0.81 +2.3 401,804 + GFF3545 0.89 +0.1 401,804 + GFF3545 0.89 -0.9 401,805 - GFF3545 0.89 +0.7 401,994 + -1.0 402,020 + -0.2 402,021 - -0.4 402,021 - -0.9 402,034 + +0.0 402,034 + -0.4 402,035 - +0.4 402,035 - -0.5 402,035 - +1.6 402,035 - -0.3
Or see this region's nucleotide sequence