Strain Fitness in Xanthobacter sp. DMC5 around GFF3520

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3518 and GFF3519 are separated by 262 nucleotidesGFF3519 and GFF3520 are separated by 150 nucleotidesGFF3520 and GFF3521 are separated by 3 nucleotides GFF3518 - hypothetical protein, at 369,344 to 370,507 GFF3518 GFF3519 - hypothetical protein, at 370,770 to 371,339 GFF3519 GFF3520 - hypothetical protein, at 371,490 to 371,765 GFF3520 GFF3521 - hypothetical protein, at 371,769 to 373,088 GFF3521 Position (kb) 371 372Strain fitness (log2 ratio) -1 0 1at 370.819 kb on + strandat 371.110 kb on - strand, within GFF3519at 371.371 kb on - strandat 371.444 kb on + strandat 371.445 kb on - strandat 371.445 kb on - strandat 371.560 kb on - strand, within GFF3520at 371.625 kb on + strand, within GFF3520at 371.626 kb on - strand, within GFF3520at 371.770 kb on + strandat 371.771 kb on - strandat 371.899 kb on - strandat 371.950 kb on + strand, within GFF3521at 372.404 kb on + strand, within GFF3521

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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370,819 + -0.7
371,110 - GFF3519 0.60 -0.2
371,371 - -0.2
371,444 + -1.0
371,445 - -0.9
371,445 - +0.8
371,560 - GFF3520 0.25 -0.4
371,625 + GFF3520 0.49 +0.2
371,626 - GFF3520 0.49 +0.5
371,770 + +0.3
371,771 - -0.8
371,899 - -0.8
371,950 + GFF3521 0.14 +0.7
372,404 + GFF3521 0.48 +1.0

Or see this region's nucleotide sequence