Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3515 and GFF3516 are separated by 3 nucleotides GFF3516 and GFF3517 are separated by 27 nucleotides GFF3517 and GFF3518 are separated by 449 nucleotides GFF3518 and GFF3519 are separated by 262 nucleotides GFF3519 and GFF3520 are separated by 150 nucleotides
GFF3515 - hypothetical protein, at 367,971 to 368,468
GFF3515
GFF3516 - hypothetical protein, at 368,472 to 368,678
GFF3516
GFF3517 - hypothetical protein, at 368,706 to 368,894
GFF3517
GFF3518 - hypothetical protein, at 369,344 to 370,507
GFF3518
GFF3519 - hypothetical protein, at 370,770 to 371,339
GFF3519
GFF3520 - hypothetical protein, at 371,490 to 371,765
GFF3520
Position (kb) 369
370
371 Strain fitness (log2 ratio) -1
0
1 at 368.422 kb on + strand at 368.422 kb on + strand at 368.423 kb on - strand at 368.889 kb on - strand at 369.333 kb on - strand at 369.345 kb on + strand at 369.588 kb on + strand, within GFF3518 at 369.589 kb on - strand, within GFF3518 at 369.835 kb on - strand, within GFF3518 at 370.056 kb on + strand, within GFF3518 at 370.164 kb on + strand, within GFF3518 at 370.164 kb on + strand, within GFF3518 at 370.165 kb on - strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.389 kb on + strand, within GFF3518 at 370.390 kb on - strand, within GFF3518 at 370.819 kb on + strand at 371.110 kb on - strand, within GFF3519 at 371.371 kb on - strand at 371.444 kb on + strand at 371.445 kb on - strand at 371.445 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 368,422 + -1.3 368,422 + -1.6 368,423 - +1.2 368,889 - +0.3 369,333 - -1.1 369,345 + -0.7 369,588 + GFF3518 0.21 +0.2 369,589 - GFF3518 0.21 +0.3 369,835 - GFF3518 0.42 +0.3 370,056 + GFF3518 0.61 +0.3 370,164 + GFF3518 0.70 -1.2 370,164 + GFF3518 0.70 +0.8 370,165 - GFF3518 0.71 +1.0 370,389 + GFF3518 0.90 +0.4 370,389 + GFF3518 0.90 -1.1 370,389 + GFF3518 0.90 -0.0 370,389 + GFF3518 0.90 -0.5 370,390 - GFF3518 0.90 -0.6 370,819 + -0.7 371,110 - GFF3519 0.60 -0.2 371,371 - -0.2 371,444 + -1.0 371,445 - -0.9 371,445 - +0.8
Or see this region's nucleotide sequence