Strain Fitness in Xanthobacter sp. DMC5 around GFF3494

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3492 and GFF3493 overlap by 4 nucleotidesGFF3493 and GFF3494 are separated by 86 nucleotidesGFF3494 and GFF3495 are separated by 106 nucleotidesGFF3495 and GFF3496 are separated by 14 nucleotidesGFF3496 and GFF3497 are separated by 22 nucleotides GFF3492 - hypothetical protein, at 348,133 to 348,453 GFF3492 GFF3493 - hypothetical protein, at 348,450 to 349,298 GFF3493 GFF3494 - hypothetical protein, at 349,385 to 350,788 GFF3494 GFF3495 - hypothetical protein, at 350,895 to 351,038 GFF3495 GFF3496 - hypothetical protein, at 351,053 to 351,373 GFF3496 GFF3497 - hypothetical protein, at 351,396 to 352,097 GFF3497 Position (kb) 349 350 351Strain fitness (log2 ratio) -2 -1 0 1at 348.413 kb on + strand, within GFF3492at 349.045 kb on + strand, within GFF3493at 349.045 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.090 kb on + strand, within GFF3493at 349.091 kb on - strand, within GFF3493at 349.091 kb on - strand, within GFF3493at 349.103 kb on - strand, within GFF3493at 349.103 kb on - strand, within GFF3493at 349.374 kb on + strandat 349.374 kb on + strandat 349.374 kb on + strandat 349.375 kb on - strandat 349.443 kb on + strandat 349.443 kb on + strandat 349.444 kb on - strandat 349.489 kb on - strandat 349.489 kb on - strandat 349.489 kb on - strandat 349.497 kb on + strandat 349.575 kb on + strand, within GFF3494at 349.647 kb on + strand, within GFF3494at 349.648 kb on - strand, within GFF3494at 349.694 kb on - strand, within GFF3494at 349.755 kb on + strand, within GFF3494at 349.755 kb on + strand, within GFF3494at 349.756 kb on - strand, within GFF3494at 349.756 kb on - strand, within GFF3494at 349.833 kb on + strand, within GFF3494at 349.833 kb on + strand, within GFF3494at 349.833 kb on + strand, within GFF3494at 349.834 kb on - strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.839 kb on + strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.840 kb on - strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.842 kb on + strand, within GFF3494at 349.843 kb on - strand, within GFF3494at 349.900 kb on + strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.901 kb on - strand, within GFF3494at 349.980 kb on + strand, within GFF3494at 349.980 kb on + strand, within GFF3494at 349.980 kb on + strand, within GFF3494at 349.981 kb on - strand, within GFF3494at 350.064 kb on + strand, within GFF3494at 350.064 kb on + strand, within GFF3494at 350.065 kb on - strand, within GFF3494at 350.065 kb on - strand, within GFF3494at 350.139 kb on + strand, within GFF3494at 350.143 kb on - strand, within GFF3494at 350.199 kb on + strand, within GFF3494at 350.200 kb on - strand, within GFF3494at 350.361 kb on + strand, within GFF3494at 350.361 kb on + strand, within GFF3494at 350.362 kb on - strand, within GFF3494at 350.362 kb on - strand, within GFF3494at 350.610 kb on + strand, within GFF3494at 350.610 kb on + strand, within GFF3494at 350.610 kb on + strand, within GFF3494at 350.611 kb on - strand, within GFF3494at 350.611 kb on - strand, within GFF3494at 350.611 kb on - strand, within GFF3494at 350.611 kb on - strand, within GFF3494at 351.072 kb on + strandat 351.073 kb on - strandat 351.366 kb on + strandat 351.367 kb on - strandat 351.598 kb on + strand, within GFF3497at 351.688 kb on + strand, within GFF3497at 351.689 kb on - strand, within GFF3497

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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348,413 + GFF3492 0.87 -1.0
349,045 + GFF3493 0.70 -0.9
349,045 + GFF3493 0.70 -0.6
349,090 + GFF3493 0.75 -0.3
349,090 + GFF3493 0.75 +0.8
349,090 + GFF3493 0.75 +1.3
349,091 - GFF3493 0.76 -0.7
349,091 - GFF3493 0.76 -0.9
349,103 - GFF3493 0.77 +0.4
349,103 - GFF3493 0.77 -1.8
349,374 + -0.3
349,374 + -0.4
349,374 + -0.4
349,375 - +0.5
349,443 + +1.0
349,443 + -0.4
349,444 - -0.5
349,489 - +1.2
349,489 - -0.3
349,489 - +1.1
349,497 + +0.3
349,575 + GFF3494 0.14 +0.7
349,647 + GFF3494 0.19 +0.0
349,648 - GFF3494 0.19 +0.7
349,694 - GFF3494 0.22 -0.2
349,755 + GFF3494 0.26 -0.5
349,755 + GFF3494 0.26 -1.2
349,756 - GFF3494 0.26 +0.7
349,756 - GFF3494 0.26 -1.5
349,833 + GFF3494 0.32 -0.4
349,833 + GFF3494 0.32 -1.2
349,833 + GFF3494 0.32 -1.6
349,834 - GFF3494 0.32 -0.2
349,839 + GFF3494 0.32 +1.6
349,839 + GFF3494 0.32 -1.9
349,839 + GFF3494 0.32 -0.3
349,839 + GFF3494 0.32 +0.3
349,840 - GFF3494 0.32 -0.1
349,840 - GFF3494 0.32 -0.8
349,840 - GFF3494 0.32 -1.3
349,840 - GFF3494 0.32 -1.4
349,842 + GFF3494 0.33 +0.9
349,842 + GFF3494 0.33 -0.1
349,842 + GFF3494 0.33 -0.4
349,842 + GFF3494 0.33 +0.3
349,843 - GFF3494 0.33 -0.8
349,900 + GFF3494 0.37 -0.0
349,901 - GFF3494 0.37 -1.1
349,901 - GFF3494 0.37 -1.2
349,901 - GFF3494 0.37 +0.1
349,901 - GFF3494 0.37 -0.8
349,980 + GFF3494 0.42 +0.8
349,980 + GFF3494 0.42 +1.0
349,980 + GFF3494 0.42 +0.6
349,981 - GFF3494 0.42 -0.7
350,064 + GFF3494 0.48 -1.3
350,064 + GFF3494 0.48 -1.1
350,065 - GFF3494 0.48 -0.4
350,065 - GFF3494 0.48 -0.4
350,139 + GFF3494 0.54 +0.8
350,143 - GFF3494 0.54 -0.1
350,199 + GFF3494 0.58 +1.2
350,200 - GFF3494 0.58 +0.6
350,361 + GFF3494 0.70 -0.4
350,361 + GFF3494 0.70 +1.1
350,362 - GFF3494 0.70 -1.3
350,362 - GFF3494 0.70 +0.1
350,610 + GFF3494 0.87 -1.0
350,610 + GFF3494 0.87 -1.3
350,610 + GFF3494 0.87 +0.8
350,611 - GFF3494 0.87 +0.3
350,611 - GFF3494 0.87 -0.0
350,611 - GFF3494 0.87 +0.2
350,611 - GFF3494 0.87 -0.1
351,072 + -0.0
351,073 - +1.0
351,366 + -1.0
351,367 - +0.9
351,598 + GFF3497 0.29 +0.4
351,688 + GFF3497 0.42 +1.0
351,689 - GFF3497 0.42 +0.0

Or see this region's nucleotide sequence