Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3490 and GFF3491 are separated by 33 nucleotides GFF3491 and GFF3492 are separated by 321 nucleotides GFF3492 and GFF3493 overlap by 4 nucleotides
GFF3490 - Virulence sensor histidine kinase PhoQ, at 345,682 to 347,106
GFF3490
GFF3491 - Transcriptional regulatory protein PhoP, at 347,140 to 347,811
GFF3491
GFF3492 - hypothetical protein, at 348,133 to 348,453
GFF3492
GFF3493 - hypothetical protein, at 348,450 to 349,298
GFF3493
Position (kb) 347
348 Strain fitness (log2 ratio) -2
-1
0
1 at 346.418 kb on + strand, within GFF3490 at 346.418 kb on + strand, within GFF3490 at 346.418 kb on + strand, within GFF3490 at 346.418 kb on + strand, within GFF3490 at 346.418 kb on + strand, within GFF3490 at 346.419 kb on - strand, within GFF3490 at 346.419 kb on - strand, within GFF3490 at 346.419 kb on - strand, within GFF3490 at 346.419 kb on - strand, within GFF3490 at 346.628 kb on + strand, within GFF3490 at 346.628 kb on + strand, within GFF3490 at 346.628 kb on + strand, within GFF3490 at 346.629 kb on - strand, within GFF3490 at 346.700 kb on + strand, within GFF3490 at 346.700 kb on + strand, within GFF3490 at 346.700 kb on + strand, within GFF3490 at 346.830 kb on - strand, within GFF3490 at 346.931 kb on + strand, within GFF3490 at 346.931 kb on + strand, within GFF3490 at 346.931 kb on + strand, within GFF3490 at 346.932 kb on - strand, within GFF3490 at 346.932 kb on - strand, within GFF3490 at 347.276 kb on + strand, within GFF3491 at 347.333 kb on + strand, within GFF3491 at 347.520 kb on - strand, within GFF3491 at 347.520 kb on - strand, within GFF3491 at 347.520 kb on - strand, within GFF3491 at 347.678 kb on + strand, within GFF3491 at 347.678 kb on + strand, within GFF3491 at 347.720 kb on + strand, within GFF3491 at 347.720 kb on + strand, within GFF3491 at 347.721 kb on - strand, within GFF3491 at 347.739 kb on - strand, within GFF3491 at 348.127 kb on + strand at 348.127 kb on + strand at 348.128 kb on - strand at 348.135 kb on - strand at 348.413 kb on + strand, within GFF3492
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 346,418 + GFF3490 0.52 +0.2 346,418 + GFF3490 0.52 +0.0 346,418 + GFF3490 0.52 -1.2 346,418 + GFF3490 0.52 -0.5 346,418 + GFF3490 0.52 +0.0 346,419 - GFF3490 0.52 -1.4 346,419 - GFF3490 0.52 +0.2 346,419 - GFF3490 0.52 +0.7 346,419 - GFF3490 0.52 +0.4 346,628 + GFF3490 0.66 -0.7 346,628 + GFF3490 0.66 +0.0 346,628 + GFF3490 0.66 -0.2 346,629 - GFF3490 0.66 -0.8 346,700 + GFF3490 0.71 -0.4 346,700 + GFF3490 0.71 -0.6 346,700 + GFF3490 0.71 -1.2 346,830 - GFF3490 0.81 +0.5 346,931 + GFF3490 0.88 -0.3 346,931 + GFF3490 0.88 -0.9 346,931 + GFF3490 0.88 -2.0 346,932 - GFF3490 0.88 -1.0 346,932 - GFF3490 0.88 -0.2 347,276 + GFF3491 0.20 +0.6 347,333 + GFF3491 0.29 +0.3 347,520 - GFF3491 0.57 +0.9 347,520 - GFF3491 0.57 -1.0 347,520 - GFF3491 0.57 +0.0 347,678 + GFF3491 0.80 +0.3 347,678 + GFF3491 0.80 +1.0 347,720 + GFF3491 0.86 +0.0 347,720 + GFF3491 0.86 +0.9 347,721 - GFF3491 0.86 -0.0 347,739 - GFF3491 0.89 +0.7 348,127 + +0.0 348,127 + +1.4 348,128 - -1.2 348,135 - +0.4 348,413 + GFF3492 0.87 -1.0
Or see this region's nucleotide sequence