Strain Fitness in Xanthobacter sp. DMC5 around GFF3485

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3483 and GFF3484 are separated by 11 nucleotidesGFF3484 and GFF3485 overlap by 4 nucleotidesGFF3485 and GFF3486 are separated by 16 nucleotides GFF3483 - hypothetical protein, at 338,944 to 340,626 GFF3483 GFF3484 - hypothetical protein, at 340,638 to 341,225 GFF3484 GFF3485 - Carnitine monooxygenase reductase subunit, at 341,222 to 342,178 GFF3485 GFF3486 - hypothetical protein, at 342,195 to 343,256 GFF3486 Position (kb) 341 342 343Strain fitness (log2 ratio) -2 -1 0 1 2at 340.238 kb on - strand, within GFF3483at 340.238 kb on - strand, within GFF3483at 340.238 kb on - strand, within GFF3483at 340.345 kb on - strand, within GFF3483at 340.345 kb on - strand, within GFF3483at 340.358 kb on - strand, within GFF3483at 340.431 kb on - strand, within GFF3483at 340.431 kb on - strand, within GFF3483at 340.468 kb on + strandat 340.469 kb on - strandat 340.469 kb on - strandat 340.565 kb on - strandat 340.565 kb on - strandat 340.621 kb on + strandat 340.622 kb on - strandat 340.622 kb on - strandat 340.622 kb on - strandat 340.652 kb on + strandat 340.671 kb on + strandat 340.672 kb on - strandat 340.672 kb on - strandat 340.672 kb on - strandat 341.043 kb on + strand, within GFF3484at 341.076 kb on - strand, within GFF3484at 341.076 kb on - strand, within GFF3484at 341.076 kb on - strand, within GFF3484at 341.217 kb on + strandat 341.218 kb on - strandat 341.218 kb on - strandat 341.393 kb on + strand, within GFF3485at 341.430 kb on - strand, within GFF3485at 341.477 kb on + strand, within GFF3485at 341.477 kb on + strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.478 kb on - strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.801 kb on + strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 341.802 kb on - strand, within GFF3485at 342.243 kb on + strandat 342.244 kb on - strandat 342.300 kb on + strandat 342.301 kb on - strandat 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.306 kb on + strand, within GFF3486at 342.307 kb on - strand, within GFF3486at 342.307 kb on - strand, within GFF3486at 342.384 kb on + strand, within GFF3486at 342.384 kb on + strand, within GFF3486at 342.385 kb on - strand, within GFF3486at 342.385 kb on - strand, within GFF3486at 342.385 kb on - strand, within GFF3486at 342.386 kb on + strand, within GFF3486at 342.387 kb on - strand, within GFF3486at 342.636 kb on + strand, within GFF3486at 342.808 kb on + strand, within GFF3486at 342.809 kb on - strand, within GFF3486at 342.829 kb on - strand, within GFF3486at 342.846 kb on + strand, within GFF3486at 342.846 kb on + strand, within GFF3486at 342.918 kb on + strand, within GFF3486at 342.918 kb on + strand, within GFF3486at 343.005 kb on + strand, within GFF3486at 343.050 kb on + strand, within GFF3486at 343.051 kb on - strand, within GFF3486at 343.143 kb on + strand, within GFF3486at 343.143 kb on + strand, within GFF3486at 343.143 kb on + strand, within GFF3486

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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340,238 - GFF3483 0.77 -0.4
340,238 - GFF3483 0.77 -1.0
340,238 - GFF3483 0.77 -0.2
340,345 - GFF3483 0.83 -0.2
340,345 - GFF3483 0.83 -0.2
340,358 - GFF3483 0.84 -0.4
340,431 - GFF3483 0.88 -0.4
340,431 - GFF3483 0.88 +1.2
340,468 + -1.8
340,469 - -0.7
340,469 - +0.3
340,565 - -0.7
340,565 - +0.3
340,621 + -1.4
340,622 - -0.1
340,622 - +0.5
340,622 - -0.2
340,652 + -0.5
340,671 + -0.6
340,672 - -1.4
340,672 - -0.5
340,672 - +1.3
341,043 + GFF3484 0.69 -1.0
341,076 - GFF3484 0.74 +0.4
341,076 - GFF3484 0.74 -0.5
341,076 - GFF3484 0.74 -0.6
341,217 + +0.6
341,218 - -0.7
341,218 - -0.1
341,393 + GFF3485 0.18 +1.3
341,430 - GFF3485 0.22 +0.4
341,477 + GFF3485 0.27 -0.8
341,477 + GFF3485 0.27 +1.6
341,478 - GFF3485 0.27 -0.9
341,478 - GFF3485 0.27 +0.5
341,478 - GFF3485 0.27 -1.3
341,478 - GFF3485 0.27 -0.2
341,478 - GFF3485 0.27 -1.6
341,478 - GFF3485 0.27 -1.7
341,478 - GFF3485 0.27 -0.0
341,801 + GFF3485 0.61 -0.2
341,801 + GFF3485 0.61 +0.0
341,801 + GFF3485 0.61 -0.7
341,801 + GFF3485 0.61 -1.0
341,801 + GFF3485 0.61 -0.4
341,801 + GFF3485 0.61 -1.8
341,801 + GFF3485 0.61 -0.3
341,801 + GFF3485 0.61 +0.0
341,801 + GFF3485 0.61 +1.6
341,801 + GFF3485 0.61 -0.6
341,802 - GFF3485 0.61 -0.1
341,802 - GFF3485 0.61 -0.7
341,802 - GFF3485 0.61 -0.5
341,802 - GFF3485 0.61 +0.4
341,802 - GFF3485 0.61 +1.1
342,243 + +0.1
342,244 - +0.7
342,300 + -1.3
342,301 - +0.3
342,306 + GFF3486 0.10 +0.7
342,306 + GFF3486 0.10 +1.8
342,306 + GFF3486 0.10 +1.1
342,306 + GFF3486 0.10 -0.6
342,306 + GFF3486 0.10 -0.4
342,307 - GFF3486 0.11 +1.0
342,307 - GFF3486 0.11 -0.1
342,384 + GFF3486 0.18 -0.2
342,384 + GFF3486 0.18 -1.0
342,385 - GFF3486 0.18 -0.3
342,385 - GFF3486 0.18 -0.1
342,385 - GFF3486 0.18 -0.4
342,386 + GFF3486 0.18 -0.6
342,387 - GFF3486 0.18 +0.2
342,636 + GFF3486 0.42 -0.6
342,808 + GFF3486 0.58 -0.6
342,809 - GFF3486 0.58 -0.7
342,829 - GFF3486 0.60 +0.3
342,846 + GFF3486 0.61 -0.5
342,846 + GFF3486 0.61 -0.2
342,918 + GFF3486 0.68 -0.7
342,918 + GFF3486 0.68 -1.9
343,005 + GFF3486 0.76 -1.3
343,050 + GFF3486 0.81 -0.7
343,051 - GFF3486 0.81 +0.1
343,143 + GFF3486 0.89 -0.8
343,143 + GFF3486 0.89 +0.3
343,143 + GFF3486 0.89 +0.1

Or see this region's nucleotide sequence