Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3464 and GFF3465 are separated by 111 nucleotides GFF3465 and GFF3466 overlap by 4 nucleotides GFF3466 and GFF3467 overlap by 107 nucleotides GFF3467 and GFF3468 are separated by 131 nucleotides
GFF3464 - Molybdate-binding protein ModA, at 317,457 to 318,254
GFF3464
GFF3465 - Molybdenum transport system permease protein ModB, at 318,366 to 319,058
GFF3465
GFF3466 - Vitamin B12 import ATP-binding protein BtuD, at 319,055 to 320,269
GFF3466
GFF3467 - hypothetical protein, at 320,163 to 320,651
GFF3467
GFF3468 - Ferrous iron permease EfeU, at 320,783 to 321,649
GFF3468
Position (kb) 319
320
321 Strain fitness (log2 ratio) -2
-1
0
1 at 318.060 kb on + strand, within GFF3464 at 318.139 kb on - strand, within GFF3464 at 318.229 kb on - strand at 318.234 kb on + strand at 318.234 kb on + strand at 318.297 kb on + strand at 318.555 kb on + strand, within GFF3465 at 318.589 kb on - strand, within GFF3465 at 318.589 kb on - strand, within GFF3465 at 318.921 kb on + strand, within GFF3465 at 318.922 kb on - strand, within GFF3465 at 318.935 kb on + strand, within GFF3465 at 318.936 kb on - strand, within GFF3465 at 318.936 kb on - strand, within GFF3465 at 319.054 kb on + strand at 319.055 kb on - strand at 319.055 kb on - strand at 319.055 kb on - strand at 319.055 kb on - strand at 319.055 kb on - strand at 319.244 kb on + strand, within GFF3466 at 319.244 kb on + strand, within GFF3466 at 319.245 kb on - strand, within GFF3466 at 319.245 kb on - strand, within GFF3466 at 319.296 kb on - strand, within GFF3466 at 319.338 kb on - strand, within GFF3466 at 319.575 kb on - strand, within GFF3466 at 319.616 kb on + strand, within GFF3466 at 319.616 kb on + strand, within GFF3466 at 320.267 kb on + strand at 320.267 kb on + strand at 320.267 kb on + strand at 320.356 kb on - strand, within GFF3467 at 320.390 kb on + strand, within GFF3467 at 320.391 kb on - strand, within GFF3467 at 320.391 kb on - strand, within GFF3467 at 320.452 kb on + strand, within GFF3467 at 320.453 kb on - strand, within GFF3467 at 320.728 kb on + strand at 320.901 kb on + strand, within GFF3468 at 320.902 kb on - strand, within GFF3468 at 321.243 kb on + strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.244 kb on - strand, within GFF3468 at 321.244 kb on - strand, within GFF3468
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 318,060 + GFF3464 0.76 -0.3 318,139 - GFF3464 0.85 +0.6 318,229 - -0.5 318,234 + +0.4 318,234 + -0.2 318,297 + +0.6 318,555 + GFF3465 0.27 -0.8 318,589 - GFF3465 0.32 -1.8 318,589 - GFF3465 0.32 -1.4 318,921 + GFF3465 0.80 -0.5 318,922 - GFF3465 0.80 -1.3 318,935 + GFF3465 0.82 -1.0 318,936 - GFF3465 0.82 -0.4 318,936 - GFF3465 0.82 -1.0 319,054 + +0.7 319,055 - -0.8 319,055 - -0.2 319,055 - +0.0 319,055 - -0.5 319,055 - +1.2 319,244 + GFF3466 0.16 -0.8 319,244 + GFF3466 0.16 -1.2 319,245 - GFF3466 0.16 -1.0 319,245 - GFF3466 0.16 -2.1 319,296 - GFF3466 0.20 -0.8 319,338 - GFF3466 0.23 -0.0 319,575 - GFF3466 0.43 -0.3 319,616 + GFF3466 0.46 -2.1 319,616 + GFF3466 0.46 -1.1 320,267 + +0.6 320,267 + -0.1 320,267 + +0.1 320,356 - GFF3467 0.39 +0.0 320,390 + GFF3467 0.46 -1.1 320,391 - GFF3467 0.47 -0.1 320,391 - GFF3467 0.47 -1.3 320,452 + GFF3467 0.59 -0.8 320,453 - GFF3467 0.59 +0.2 320,728 + +0.0 320,901 + GFF3468 0.14 -0.3 320,902 - GFF3468 0.14 -0.5 321,243 + GFF3468 0.53 -1.3 321,244 - GFF3468 0.53 -0.2 321,244 - GFF3468 0.53 -1.0 321,244 - GFF3468 0.53 -0.0 321,244 - GFF3468 0.53 +0.7
Or see this region's nucleotide sequence