Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3421 and GFF3422 are separated by 104 nucleotides GFF3422 and GFF3423 are separated by 60 nucleotides GFF3423 and GFF3424 are separated by 178 nucleotides
GFF3421 - Alpha-ketoglutarate-dependent sulfate ester dioxygenase, at 267,413 to 268,387
GFF3421
GFF3422 - hypothetical protein, at 268,492 to 268,836
GFF3422
GFF3423 - Protein tas, at 268,897 to 269,952
GFF3423
GFF3424 - Nitrilotriacetate monooxygenase component A, at 270,131 to 271,483
GFF3424
Position (kb) 268
269
270 Strain fitness (log2 ratio) -2
-1
0
1
2 at 267.931 kb on + strand, within GFF3421 at 267.932 kb on - strand, within GFF3421 at 267.932 kb on - strand, within GFF3421 at 268.068 kb on + strand, within GFF3421 at 268.069 kb on - strand, within GFF3421 at 268.256 kb on + strand, within GFF3421 at 268.256 kb on + strand, within GFF3421 at 268.257 kb on - strand, within GFF3421 at 268.257 kb on - strand, within GFF3421 at 268.558 kb on + strand, within GFF3422 at 268.558 kb on + strand, within GFF3422 at 268.753 kb on + strand, within GFF3422 at 268.754 kb on - strand, within GFF3422 at 268.762 kb on + strand, within GFF3422 at 268.762 kb on + strand, within GFF3422 at 268.763 kb on - strand, within GFF3422 at 269.070 kb on + strand, within GFF3423 at 269.071 kb on - strand, within GFF3423 at 269.185 kb on + strand, within GFF3423 at 269.186 kb on - strand, within GFF3423 at 269.186 kb on - strand, within GFF3423 at 269.275 kb on + strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.276 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.288 kb on - strand, within GFF3423 at 269.533 kb on + strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.534 kb on - strand, within GFF3423 at 269.609 kb on - strand, within GFF3423 at 269.644 kb on + strand, within GFF3423 at 269.645 kb on - strand, within GFF3423 at 269.740 kb on + strand, within GFF3423 at 269.740 kb on + strand, within GFF3423 at 269.741 kb on - strand, within GFF3423 at 270.051 kb on + strand at 270.052 kb on - strand at 270.182 kb on + strand at 270.183 kb on - strand at 270.243 kb on - strand at 270.438 kb on - strand, within GFF3424 at 270.438 kb on - strand, within GFF3424 at 270.438 kb on - strand, within GFF3424
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 267,931 + GFF3421 0.53 -0.7 267,932 - GFF3421 0.53 +0.3 267,932 - GFF3421 0.53 -0.5 268,068 + GFF3421 0.67 +0.2 268,069 - GFF3421 0.67 -0.2 268,256 + GFF3421 0.86 +0.4 268,256 + GFF3421 0.86 -0.7 268,257 - GFF3421 0.87 -0.3 268,257 - GFF3421 0.87 -0.7 268,558 + GFF3422 0.19 -0.2 268,558 + GFF3422 0.19 -2.4 268,753 + GFF3422 0.76 -0.4 268,754 - GFF3422 0.76 +0.5 268,762 + GFF3422 0.78 -0.2 268,762 + GFF3422 0.78 -0.2 268,763 - GFF3422 0.79 +0.8 269,070 + GFF3423 0.16 -2.3 269,071 - GFF3423 0.16 -0.4 269,185 + GFF3423 0.27 +2.1 269,186 - GFF3423 0.27 -0.7 269,186 - GFF3423 0.27 -0.2 269,275 + GFF3423 0.36 -0.6 269,276 - GFF3423 0.36 +0.1 269,276 - GFF3423 0.36 +1.0 269,276 - GFF3423 0.36 -1.5 269,288 - GFF3423 0.37 -1.0 269,288 - GFF3423 0.37 +0.1 269,288 - GFF3423 0.37 -0.8 269,533 + GFF3423 0.60 +0.5 269,534 - GFF3423 0.60 +0.4 269,534 - GFF3423 0.60 -0.4 269,534 - GFF3423 0.60 -0.9 269,534 - GFF3423 0.60 -0.1 269,609 - GFF3423 0.67 -0.4 269,644 + GFF3423 0.71 -0.9 269,645 - GFF3423 0.71 +1.4 269,740 + GFF3423 0.80 -0.0 269,740 + GFF3423 0.80 -0.2 269,741 - GFF3423 0.80 -0.8 270,051 + -0.2 270,052 - -1.0 270,182 + -0.2 270,183 - +0.3 270,243 - -1.2 270,438 - GFF3424 0.23 +0.1 270,438 - GFF3424 0.23 -1.1 270,438 - GFF3424 0.23 +1.2
Or see this region's nucleotide sequence