Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3418 and GFF3419 overlap by 1 nucleotides GFF3419 and GFF3420 overlap by 4 nucleotides
GFF3418 - hypothetical protein, at 263,536 to 264,576
GFF3418
GFF3419 - Glutathione transport system permease protein GsiC, at 264,576 to 265,568
GFF3419
GFF3420 - Oligopeptide-binding protein AppA, at 265,565 to 267,208
GFF3420
Position (kb) 264
265
266 Strain fitness (log2 ratio) -2
-1
0
1
2 at 263.645 kb on + strand, within GFF3418 at 264.684 kb on + strand, within GFF3419 at 264.709 kb on + strand, within GFF3419 at 264.934 kb on + strand, within GFF3419 at 264.934 kb on + strand, within GFF3419 at 264.934 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.946 kb on + strand, within GFF3419 at 264.947 kb on - strand, within GFF3419 at 264.947 kb on - strand, within GFF3419 at 264.982 kb on + strand, within GFF3419 at 265.120 kb on + strand, within GFF3419 at 265.121 kb on - strand, within GFF3419 at 265.121 kb on - strand, within GFF3419 at 265.291 kb on + strand, within GFF3419 at 265.292 kb on - strand, within GFF3419 at 265.334 kb on + strand, within GFF3419 at 265.336 kb on + strand, within GFF3419 at 265.336 kb on + strand, within GFF3419 at 265.337 kb on - strand, within GFF3419 at 265.621 kb on + strand at 265.621 kb on + strand at 265.621 kb on + strand at 265.622 kb on - strand at 265.794 kb on + strand, within GFF3420 at 265.794 kb on + strand, within GFF3420 at 265.795 kb on - strand, within GFF3420 at 265.923 kb on + strand, within GFF3420 at 265.938 kb on + strand, within GFF3420 at 266.040 kb on + strand, within GFF3420 at 266.040 kb on + strand, within GFF3420 at 266.040 kb on + strand, within GFF3420 at 266.041 kb on - strand, within GFF3420 at 266.082 kb on + strand, within GFF3420 at 266.083 kb on - strand, within GFF3420 at 266.130 kb on + strand, within GFF3420 at 266.131 kb on - strand, within GFF3420 at 266.209 kb on - strand, within GFF3420 at 266.301 kb on + strand, within GFF3420 at 266.325 kb on + strand, within GFF3420 at 266.325 kb on + strand, within GFF3420 at 266.331 kb on + strand, within GFF3420 at 266.490 kb on + strand, within GFF3420 at 266.491 kb on - strand, within GFF3420
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 263,645 + GFF3418 0.10 +2.1 264,684 + GFF3419 0.11 -0.1 264,709 + GFF3419 0.13 +0.1 264,934 + GFF3419 0.36 -0.6 264,934 + GFF3419 0.36 -0.7 264,934 + GFF3419 0.36 -0.3 264,946 + GFF3419 0.37 +0.3 264,946 + GFF3419 0.37 -0.2 264,946 + GFF3419 0.37 -0.1 264,946 + GFF3419 0.37 +0.4 264,947 - GFF3419 0.37 -0.0 264,947 - GFF3419 0.37 -0.6 264,982 + GFF3419 0.41 -0.1 265,120 + GFF3419 0.55 -0.6 265,121 - GFF3419 0.55 +0.8 265,121 - GFF3419 0.55 -0.7 265,291 + GFF3419 0.72 +0.4 265,292 - GFF3419 0.72 -0.5 265,334 + GFF3419 0.76 +0.2 265,336 + GFF3419 0.77 -1.6 265,336 + GFF3419 0.77 -0.7 265,337 - GFF3419 0.77 -0.2 265,621 + -0.5 265,621 + +0.6 265,621 + +0.6 265,622 - -0.1 265,794 + GFF3420 0.14 -0.1 265,794 + GFF3420 0.14 -0.5 265,795 - GFF3420 0.14 +0.7 265,923 + GFF3420 0.22 +0.7 265,938 + GFF3420 0.23 +0.9 266,040 + GFF3420 0.29 +0.2 266,040 + GFF3420 0.29 -0.6 266,040 + GFF3420 0.29 -0.2 266,041 - GFF3420 0.29 -0.2 266,082 + GFF3420 0.31 -1.6 266,083 - GFF3420 0.32 -0.8 266,130 + GFF3420 0.34 +0.2 266,131 - GFF3420 0.34 +0.2 266,209 - GFF3420 0.39 +0.5 266,301 + GFF3420 0.45 +0.0 266,325 + GFF3420 0.46 +0.5 266,325 + GFF3420 0.46 +0.5 266,331 + GFF3420 0.47 +0.4 266,490 + GFF3420 0.56 -0.1 266,491 - GFF3420 0.56 -2.0
Or see this region's nucleotide sequence