Strain Fitness in Xanthobacter sp. DMC5 around GFF3404

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3403 and GFF3404 are separated by 47 nucleotidesGFF3404 and GFF3405 are separated by 14 nucleotides GFF3403 - hypothetical protein, at 247,309 to 248,175 GFF3403 GFF3404 - Dimethyl-sulfide monooxygenase, at 248,223 to 249,638 GFF3404 GFF3405 - putative FMNH2-dependent monooxygenase SfnC, at 249,653 to 250,864 GFF3405 Position (kb) 248 249 250Strain fitness (log2 ratio) -2 -1 0 1at 247.463 kb on + strand, within GFF3403at 247.463 kb on + strand, within GFF3403at 247.464 kb on - strand, within GFF3403at 247.499 kb on + strand, within GFF3403at 247.499 kb on + strand, within GFF3403at 247.500 kb on - strand, within GFF3403at 247.500 kb on - strand, within GFF3403at 248.216 kb on + strandat 248.216 kb on + strandat 248.216 kb on + strandat 248.217 kb on - strandat 248.339 kb on + strandat 248.350 kb on + strandat 248.350 kb on + strandat 248.351 kb on - strandat 248.362 kb on + strandat 248.363 kb on - strandat 248.632 kb on + strand, within GFF3404at 248.633 kb on - strand, within GFF3404at 248.633 kb on - strand, within GFF3404at 248.633 kb on - strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.719 kb on + strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.720 kb on - strand, within GFF3404at 248.728 kb on + strand, within GFF3404at 248.728 kb on + strand, within GFF3404at 248.951 kb on - strand, within GFF3404at 248.951 kb on - strand, within GFF3404at 249.007 kb on + strand, within GFF3404at 249.008 kb on - strand, within GFF3404at 249.010 kb on + strand, within GFF3404at 249.011 kb on - strand, within GFF3404at 249.011 kb on - strand, within GFF3404at 249.118 kb on + strand, within GFF3404at 249.287 kb on - strand, within GFF3404at 249.287 kb on - strand, within GFF3404at 249.299 kb on - strand, within GFF3404at 249.299 kb on - strand, within GFF3404at 249.428 kb on - strand, within GFF3404at 249.428 kb on - strand, within GFF3404at 249.436 kb on + strand, within GFF3404at 249.437 kb on - strand, within GFF3404at 249.437 kb on - strand, within GFF3404at 249.437 kb on - strand, within GFF3404at 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.524 kb on + strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.525 kb on - strandat 249.526 kb on + strandat 249.527 kb on - strandat 249.660 kb on + strandat 249.660 kb on + strandat 249.661 kb on - strandat 249.661 kb on - strandat 249.661 kb on - strandat 249.661 kb on - strandat 249.696 kb on + strandat 249.697 kb on - strandat 249.720 kb on + strandat 249.720 kb on + strandat 249.720 kb on + strandat 249.720 kb on + strandat 249.721 kb on - strandat 249.774 kb on + strandat 249.781 kb on - strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.870 kb on + strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 249.871 kb on - strand, within GFF3405at 250.002 kb on + strand, within GFF3405at 250.003 kb on - strand, within GFF3405at 250.017 kb on + strand, within GFF3405at 250.017 kb on + strand, within GFF3405at 250.017 kb on + strand, within GFF3405at 250.018 kb on - strand, within GFF3405at 250.018 kb on - strand, within GFF3405at 250.081 kb on - strand, within GFF3405at 250.081 kb on - strand, within GFF3405at 250.123 kb on - strand, within GFF3405at 250.223 kb on - strand, within GFF3405at 250.416 kb on + strand, within GFF3405at 250.417 kb on - strand, within GFF3405at 250.564 kb on - strand, within GFF3405at 250.564 kb on - strand, within GFF3405at 250.569 kb on + strand, within GFF3405at 250.569 kb on + strand, within GFF3405

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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247,463 + GFF3403 0.18 -0.0
247,463 + GFF3403 0.18 +0.7
247,464 - GFF3403 0.18 +1.4
247,499 + GFF3403 0.22 -2.1
247,499 + GFF3403 0.22 -0.7
247,500 - GFF3403 0.22 -0.1
247,500 - GFF3403 0.22 +0.2
248,216 + -0.2
248,216 + +0.3
248,216 + -0.3
248,217 - -1.8
248,339 + -0.1
248,350 + -0.8
248,350 + +0.5
248,351 - -0.0
248,362 + +0.8
248,363 - -0.1
248,632 + GFF3404 0.29 -0.9
248,633 - GFF3404 0.29 -0.6
248,633 - GFF3404 0.29 -1.0
248,633 - GFF3404 0.29 -0.5
248,719 + GFF3404 0.35 -1.3
248,719 + GFF3404 0.35 +0.9
248,719 + GFF3404 0.35 -0.2
248,719 + GFF3404 0.35 +0.8
248,719 + GFF3404 0.35 -0.4
248,720 - GFF3404 0.35 +0.3
248,720 - GFF3404 0.35 -1.4
248,720 - GFF3404 0.35 -1.0
248,720 - GFF3404 0.35 -0.6
248,728 + GFF3404 0.36 +0.1
248,728 + GFF3404 0.36 -2.3
248,951 - GFF3404 0.51 +1.3
248,951 - GFF3404 0.51 +0.1
249,007 + GFF3404 0.55 +0.9
249,008 - GFF3404 0.55 -2.1
249,010 + GFF3404 0.56 -0.3
249,011 - GFF3404 0.56 -0.1
249,011 - GFF3404 0.56 -0.4
249,118 + GFF3404 0.63 +0.7
249,287 - GFF3404 0.75 -1.0
249,287 - GFF3404 0.75 +0.7
249,299 - GFF3404 0.76 +0.5
249,299 - GFF3404 0.76 -0.9
249,428 - GFF3404 0.85 -0.3
249,428 - GFF3404 0.85 +0.7
249,436 + GFF3404 0.86 +0.7
249,437 - GFF3404 0.86 +0.3
249,437 - GFF3404 0.86 +0.5
249,437 - GFF3404 0.86 -0.5
249,524 + -0.2
249,524 + -0.4
249,524 + +0.9
249,524 + +0.3
249,525 - +0.5
249,525 - -0.4
249,525 - +1.4
249,526 + -0.4
249,527 - +0.2
249,660 + +0.2
249,660 + +0.3
249,661 - +1.3
249,661 - -0.4
249,661 - +0.3
249,661 - +0.3
249,696 + +0.6
249,697 - -0.1
249,720 + -0.2
249,720 + +0.1
249,720 + +0.1
249,720 + +0.6
249,721 - -0.6
249,774 + -1.1
249,781 - GFF3405 0.11 -0.5
249,870 + GFF3405 0.18 -0.6
249,870 + GFF3405 0.18 -0.7
249,870 + GFF3405 0.18 -0.7
249,870 + GFF3405 0.18 -0.5
249,871 - GFF3405 0.18 +1.2
249,871 - GFF3405 0.18 +1.7
249,871 - GFF3405 0.18 +0.2
249,871 - GFF3405 0.18 +0.7
250,002 + GFF3405 0.29 -0.9
250,003 - GFF3405 0.29 -0.6
250,017 + GFF3405 0.30 -0.1
250,017 + GFF3405 0.30 +1.2
250,017 + GFF3405 0.30 -0.6
250,018 - GFF3405 0.30 -0.5
250,018 - GFF3405 0.30 -0.7
250,081 - GFF3405 0.35 -1.0
250,081 - GFF3405 0.35 -1.4
250,123 - GFF3405 0.39 -0.3
250,223 - GFF3405 0.47 +0.6
250,416 + GFF3405 0.63 -0.7
250,417 - GFF3405 0.63 -1.0
250,564 - GFF3405 0.75 +1.2
250,564 - GFF3405 0.75 -0.5
250,569 + GFF3405 0.76 -0.8
250,569 + GFF3405 0.76 +0.1

Or see this region's nucleotide sequence