Strain Fitness in Xanthobacter sp. DMC5 around GFF3377

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3376 and GFF3377 are separated by 350 nucleotidesGFF3377 and GFF3378 are separated by 5 nucleotidesGFF3378 and GFF3379 are separated by 50 nucleotides GFF3376 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 220,104 to 220,784 GFF3376 GFF3377 - Cation/acetate symporter ActP, at 221,135 to 222,754 GFF3377 GFF3378 - hypothetical protein, at 222,760 to 223,026 GFF3378 GFF3379 - NADPH dehydrogenase, at 223,077 to 224,240 GFF3379 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 220.219 kb on - strand, within GFF3376at 220.219 kb on - strand, within GFF3376at 220.219 kb on - strand, within GFF3376at 220.237 kb on - strand, within GFF3376at 220.308 kb on + strand, within GFF3376at 220.308 kb on + strand, within GFF3376at 220.309 kb on - strand, within GFF3376at 220.309 kb on - strand, within GFF3376at 220.524 kb on + strand, within GFF3376at 220.525 kb on - strand, within GFF3376at 220.708 kb on - strand, within GFF3376at 220.849 kb on + strandat 220.849 kb on + strandat 220.850 kb on - strandat 220.850 kb on - strandat 220.850 kb on - strandat 220.850 kb on - strandat 220.871 kb on + strandat 220.871 kb on + strandat 220.872 kb on - strandat 220.999 kb on - strandat 221.088 kb on + strandat 221.089 kb on - strandat 221.115 kb on + strandat 221.115 kb on + strandat 221.115 kb on + strandat 221.136 kb on + strandat 221.136 kb on + strandat 221.243 kb on - strandat 221.243 kb on - strandat 221.389 kb on - strand, within GFF3377at 221.389 kb on - strand, within GFF3377at 221.436 kb on + strand, within GFF3377at 221.453 kb on - strand, within GFF3377at 221.453 kb on - strand, within GFF3377at 221.453 kb on - strand, within GFF3377at 221.454 kb on + strand, within GFF3377at 221.454 kb on + strand, within GFF3377at 221.455 kb on - strand, within GFF3377at 221.584 kb on - strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.760 kb on + strand, within GFF3377at 221.761 kb on - strand, within GFF3377at 221.761 kb on - strand, within GFF3377at 221.761 kb on - strand, within GFF3377at 221.858 kb on + strand, within GFF3377at 221.859 kb on - strand, within GFF3377at 221.927 kb on + strand, within GFF3377at 221.928 kb on - strand, within GFF3377at 221.928 kb on - strand, within GFF3377at 222.045 kb on + strand, within GFF3377at 222.046 kb on - strand, within GFF3377at 222.163 kb on - strand, within GFF3377at 222.163 kb on - strand, within GFF3377at 222.163 kb on - strand, within GFF3377at 222.204 kb on + strand, within GFF3377at 222.205 kb on - strand, within GFF3377at 222.205 kb on - strand, within GFF3377at 222.205 kb on - strand, within GFF3377at 222.205 kb on - strand, within GFF3377at 222.264 kb on + strand, within GFF3377at 222.265 kb on - strand, within GFF3377at 222.298 kb on + strand, within GFF3377at 222.352 kb on + strand, within GFF3377at 222.555 kb on + strand, within GFF3377at 222.555 kb on + strand, within GFF3377at 222.555 kb on + strand, within GFF3377at 222.556 kb on - strand, within GFF3377at 222.556 kb on - strand, within GFF3377at 222.783 kb on + strandat 222.803 kb on + strand, within GFF3378at 222.803 kb on + strand, within GFF3378at 222.803 kb on + strand, within GFF3378at 222.803 kb on + strand, within GFF3378at 222.804 kb on - strand, within GFF3378at 222.804 kb on - strand, within GFF3378at 222.847 kb on + strand, within GFF3378at 222.939 kb on - strand, within GFF3378at 222.939 kb on - strand, within GFF3378at 223.156 kb on + strandat 223.156 kb on + strandat 223.160 kb on + strandat 223.161 kb on - strandat 223.161 kb on - strandat 223.161 kb on - strandat 223.231 kb on + strand, within GFF3379at 223.643 kb on - strand, within GFF3379at 223.643 kb on - strand, within GFF3379at 223.682 kb on + strand, within GFF3379at 223.683 kb on - strand, within GFF3379at 223.683 kb on - strand, within GFF3379at 223.683 kb on - strand, within GFF3379at 223.683 kb on - strand, within GFF3379

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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220,219 - GFF3376 0.17 +0.5
220,219 - GFF3376 0.17 -0.1
220,219 - GFF3376 0.17 -0.4
220,237 - GFF3376 0.20 +0.0
220,308 + GFF3376 0.30 -0.1
220,308 + GFF3376 0.30 +0.5
220,309 - GFF3376 0.30 +1.2
220,309 - GFF3376 0.30 -0.8
220,524 + GFF3376 0.62 -0.8
220,525 - GFF3376 0.62 +0.6
220,708 - GFF3376 0.89 +0.6
220,849 + +0.3
220,849 + +0.6
220,850 - -0.3
220,850 - -2.0
220,850 - +0.9
220,850 - -1.4
220,871 + -1.1
220,871 + -1.1
220,872 - -0.5
220,999 - -2.1
221,088 + +0.1
221,089 - -0.4
221,115 + +1.9
221,115 + -0.7
221,115 + -0.3
221,136 + -0.4
221,136 + +0.6
221,243 - -0.4
221,243 - -0.4
221,389 - GFF3377 0.16 +0.6
221,389 - GFF3377 0.16 -2.9
221,436 + GFF3377 0.19 +0.0
221,453 - GFF3377 0.20 +0.5
221,453 - GFF3377 0.20 -0.3
221,453 - GFF3377 0.20 +0.6
221,454 + GFF3377 0.20 -0.7
221,454 + GFF3377 0.20 -0.3
221,455 - GFF3377 0.20 +0.0
221,584 - GFF3377 0.28 -1.5
221,760 + GFF3377 0.39 +0.5
221,760 + GFF3377 0.39 -0.6
221,760 + GFF3377 0.39 -0.5
221,760 + GFF3377 0.39 +0.7
221,760 + GFF3377 0.39 +1.2
221,760 + GFF3377 0.39 -0.5
221,760 + GFF3377 0.39 -0.4
221,761 - GFF3377 0.39 +0.9
221,761 - GFF3377 0.39 -0.1
221,761 - GFF3377 0.39 -0.4
221,858 + GFF3377 0.45 -0.4
221,859 - GFF3377 0.45 -1.1
221,927 + GFF3377 0.49 +0.6
221,928 - GFF3377 0.49 -1.7
221,928 - GFF3377 0.49 -1.0
222,045 + GFF3377 0.56 -0.1
222,046 - GFF3377 0.56 +1.0
222,163 - GFF3377 0.63 -1.5
222,163 - GFF3377 0.63 +0.5
222,163 - GFF3377 0.63 -0.6
222,204 + GFF3377 0.66 +0.6
222,205 - GFF3377 0.66 +0.6
222,205 - GFF3377 0.66 -0.1
222,205 - GFF3377 0.66 -0.2
222,205 - GFF3377 0.66 -0.1
222,264 + GFF3377 0.70 +0.2
222,265 - GFF3377 0.70 +0.6
222,298 + GFF3377 0.72 +1.1
222,352 + GFF3377 0.75 +0.3
222,555 + GFF3377 0.88 -0.2
222,555 + GFF3377 0.88 +0.6
222,555 + GFF3377 0.88 +1.5
222,556 - GFF3377 0.88 +0.0
222,556 - GFF3377 0.88 -0.5
222,783 + +0.3
222,803 + GFF3378 0.16 +0.6
222,803 + GFF3378 0.16 +1.2
222,803 + GFF3378 0.16 -0.1
222,803 + GFF3378 0.16 -1.3
222,804 - GFF3378 0.16 +0.3
222,804 - GFF3378 0.16 -0.4
222,847 + GFF3378 0.33 -0.1
222,939 - GFF3378 0.67 +0.6
222,939 - GFF3378 0.67 -0.5
223,156 + -0.7
223,156 + -0.4
223,160 + -1.2
223,161 - -0.1
223,161 - +0.1
223,161 - +0.5
223,231 + GFF3379 0.13 -1.3
223,643 - GFF3379 0.49 +2.0
223,643 - GFF3379 0.49 +0.2
223,682 + GFF3379 0.52 -0.3
223,683 - GFF3379 0.52 -0.4
223,683 - GFF3379 0.52 +1.2
223,683 - GFF3379 0.52 -0.3
223,683 - GFF3379 0.52 +0.1

Or see this region's nucleotide sequence