Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3375 and GFF3376 are separated by 490 nucleotides GFF3376 and GFF3377 are separated by 350 nucleotides
GFF3375 - hypothetical protein, at 218,846 to 219,613
GFF3375
GFF3376 - Peroxyureidoacrylate/ureidoacrylate amidohydrolase RutB, at 220,104 to 220,784
GFF3376
GFF3377 - Cation/acetate symporter ActP, at 221,135 to 222,754
GFF3377
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 219.337 kb on - strand, within GFF3375 at 219.339 kb on - strand, within GFF3375 at 219.339 kb on - strand, within GFF3375 at 219.426 kb on + strand, within GFF3375 at 219.468 kb on - strand, within GFF3375 at 219.538 kb on - strand at 219.538 kb on - strand at 219.542 kb on + strand at 219.542 kb on + strand at 219.542 kb on + strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.543 kb on - strand at 219.812 kb on + strand at 219.813 kb on - strand at 219.847 kb on - strand at 220.128 kb on + strand at 220.129 kb on - strand at 220.219 kb on - strand, within GFF3376 at 220.219 kb on - strand, within GFF3376 at 220.219 kb on - strand, within GFF3376 at 220.237 kb on - strand, within GFF3376 at 220.308 kb on + strand, within GFF3376 at 220.308 kb on + strand, within GFF3376 at 220.309 kb on - strand, within GFF3376 at 220.309 kb on - strand, within GFF3376 at 220.524 kb on + strand, within GFF3376 at 220.525 kb on - strand, within GFF3376 at 220.708 kb on - strand, within GFF3376 at 220.849 kb on + strand at 220.849 kb on + strand at 220.850 kb on - strand at 220.850 kb on - strand at 220.850 kb on - strand at 220.850 kb on - strand at 220.871 kb on + strand at 220.871 kb on + strand at 220.872 kb on - strand at 220.999 kb on - strand at 221.088 kb on + strand at 221.089 kb on - strand at 221.115 kb on + strand at 221.115 kb on + strand at 221.115 kb on + strand at 221.136 kb on + strand at 221.136 kb on + strand at 221.243 kb on - strand at 221.243 kb on - strand at 221.389 kb on - strand, within GFF3377 at 221.389 kb on - strand, within GFF3377 at 221.436 kb on + strand, within GFF3377 at 221.453 kb on - strand, within GFF3377 at 221.453 kb on - strand, within GFF3377 at 221.453 kb on - strand, within GFF3377 at 221.454 kb on + strand, within GFF3377 at 221.454 kb on + strand, within GFF3377 at 221.455 kb on - strand, within GFF3377 at 221.584 kb on - strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.760 kb on + strand, within GFF3377 at 221.761 kb on - strand, within GFF3377 at 221.761 kb on - strand, within GFF3377 at 221.761 kb on - strand, within GFF3377
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 219,337 - GFF3375 0.64 -0.2 219,339 - GFF3375 0.64 +0.4 219,339 - GFF3375 0.64 +0.2 219,426 + GFF3375 0.76 -0.6 219,468 - GFF3375 0.81 -0.5 219,538 - +0.5 219,538 - -0.6 219,542 + -0.4 219,542 + +1.0 219,542 + -0.1 219,543 - -0.8 219,543 - +0.1 219,543 - +0.4 219,543 - +0.3 219,812 + +0.0 219,813 - +0.2 219,847 - -0.4 220,128 + -0.5 220,129 - -0.7 220,219 - GFF3376 0.17 +0.5 220,219 - GFF3376 0.17 -0.1 220,219 - GFF3376 0.17 -0.4 220,237 - GFF3376 0.20 +0.0 220,308 + GFF3376 0.30 -0.1 220,308 + GFF3376 0.30 +0.5 220,309 - GFF3376 0.30 +1.2 220,309 - GFF3376 0.30 -0.8 220,524 + GFF3376 0.62 -0.8 220,525 - GFF3376 0.62 +0.6 220,708 - GFF3376 0.89 +0.6 220,849 + +0.3 220,849 + +0.6 220,850 - -0.3 220,850 - -2.0 220,850 - +0.9 220,850 - -1.4 220,871 + -1.1 220,871 + -1.1 220,872 - -0.5 220,999 - -2.1 221,088 + +0.1 221,089 - -0.4 221,115 + +1.9 221,115 + -0.7 221,115 + -0.3 221,136 + -0.4 221,136 + +0.6 221,243 - -0.4 221,243 - -0.4 221,389 - GFF3377 0.16 +0.6 221,389 - GFF3377 0.16 -2.9 221,436 + GFF3377 0.19 +0.0 221,453 - GFF3377 0.20 +0.5 221,453 - GFF3377 0.20 -0.3 221,453 - GFF3377 0.20 +0.6 221,454 + GFF3377 0.20 -0.7 221,454 + GFF3377 0.20 -0.3 221,455 - GFF3377 0.20 +0.0 221,584 - GFF3377 0.28 -1.5 221,760 + GFF3377 0.39 +0.5 221,760 + GFF3377 0.39 -0.6 221,760 + GFF3377 0.39 -0.5 221,760 + GFF3377 0.39 +0.7 221,760 + GFF3377 0.39 +1.2 221,760 + GFF3377 0.39 -0.5 221,760 + GFF3377 0.39 -0.4 221,761 - GFF3377 0.39 +0.9 221,761 - GFF3377 0.39 -0.1 221,761 - GFF3377 0.39 -0.4
Or see this region's nucleotide sequence