Strain Fitness in Xanthobacter sp. DMC5 around GFF3367

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3366 and GFF3367 are separated by 35 nucleotidesGFF3367 and GFF3368 are separated by 46 nucleotides GFF3366 - hypothetical protein, at 210,889 to 212,151 GFF3366 GFF3367 - hypothetical protein, at 212,187 to 212,951 GFF3367 GFF3368 - L-lactate dehydrogenase, at 212,998 to 214,188 GFF3368 Position (kb) 212 213Strain fitness (log2 ratio) -2 -1 0 1at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.334 kb on + strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.335 kb on - strand, within GFF3366at 211.583 kb on + strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.659 kb on - strand, within GFF3366at 211.667 kb on + strand, within GFF3366at 211.668 kb on - strand, within GFF3366at 211.668 kb on - strand, within GFF3366at 211.683 kb on + strand, within GFF3366at 211.683 kb on + strand, within GFF3366at 211.891 kb on + strand, within GFF3366at 211.891 kb on + strand, within GFF3366at 211.892 kb on - strand, within GFF3366at 211.947 kb on + strand, within GFF3366at 211.948 kb on - strand, within GFF3366at 211.982 kb on + strand, within GFF3366at 211.982 kb on + strand, within GFF3366at 212.154 kb on + strandat 212.154 kb on + strandat 212.154 kb on + strandat 212.154 kb on + strandat 212.154 kb on + strandat 212.155 kb on - strandat 212.155 kb on - strandat 212.155 kb on - strandat 212.155 kb on - strandat 212.243 kb on - strandat 212.243 kb on - strandat 212.243 kb on - strandat 212.243 kb on - strandat 212.357 kb on - strand, within GFF3367at 212.357 kb on - strand, within GFF3367at 212.377 kb on + strand, within GFF3367at 212.377 kb on + strand, within GFF3367at 212.378 kb on - strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.392 kb on + strand, within GFF3367at 212.602 kb on + strand, within GFF3367at 212.603 kb on - strand, within GFF3367at 212.650 kb on + strand, within GFF3367at 212.650 kb on + strand, within GFF3367at 212.650 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.656 kb on + strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.657 kb on - strand, within GFF3367at 212.686 kb on + strand, within GFF3367at 212.902 kb on + strandat 212.903 kb on - strandat 212.903 kb on - strandat 212.939 kb on - strandat 213.035 kb on + strandat 213.050 kb on - strandat 213.173 kb on + strand, within GFF3368at 213.173 kb on + strand, within GFF3368at 213.177 kb on + strand, within GFF3368at 213.177 kb on + strand, within GFF3368

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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211,334 + GFF3366 0.35 -0.5
211,334 + GFF3366 0.35 +1.2
211,334 + GFF3366 0.35 +0.6
211,334 + GFF3366 0.35 +0.7
211,334 + GFF3366 0.35 -0.8
211,334 + GFF3366 0.35 +0.1
211,335 - GFF3366 0.35 +0.5
211,335 - GFF3366 0.35 +0.8
211,335 - GFF3366 0.35 -1.3
211,335 - GFF3366 0.35 -0.4
211,335 - GFF3366 0.35 +1.2
211,583 + GFF3366 0.55 +0.1
211,659 - GFF3366 0.61 +0.6
211,659 - GFF3366 0.61 +0.7
211,659 - GFF3366 0.61 -1.1
211,659 - GFF3366 0.61 -1.7
211,659 - GFF3366 0.61 -0.0
211,667 + GFF3366 0.62 +0.1
211,668 - GFF3366 0.62 +0.5
211,668 - GFF3366 0.62 +0.8
211,683 + GFF3366 0.63 +0.8
211,683 + GFF3366 0.63 +0.2
211,891 + GFF3366 0.79 -0.5
211,891 + GFF3366 0.79 -0.2
211,892 - GFF3366 0.79 +0.5
211,947 + GFF3366 0.84 -0.2
211,948 - GFF3366 0.84 -0.9
211,982 + GFF3366 0.87 +1.2
211,982 + GFF3366 0.87 -0.7
212,154 + +0.0
212,154 + -1.0
212,154 + -0.9
212,154 + -1.3
212,154 + +1.0
212,155 - +0.2
212,155 - +0.6
212,155 - -0.5
212,155 - +1.0
212,243 - -0.0
212,243 - -0.3
212,243 - +0.0
212,243 - -1.5
212,357 - GFF3367 0.22 +0.5
212,357 - GFF3367 0.22 +0.5
212,377 + GFF3367 0.25 +0.5
212,377 + GFF3367 0.25 -1.4
212,378 - GFF3367 0.25 -0.4
212,392 + GFF3367 0.27 -1.7
212,392 + GFF3367 0.27 +0.3
212,392 + GFF3367 0.27 -0.5
212,392 + GFF3367 0.27 -0.3
212,602 + GFF3367 0.54 -0.5
212,603 - GFF3367 0.54 -0.2
212,650 + GFF3367 0.61 -1.2
212,650 + GFF3367 0.61 +0.2
212,650 + GFF3367 0.61 +0.6
212,656 + GFF3367 0.61 -0.2
212,656 + GFF3367 0.61 +0.8
212,656 + GFF3367 0.61 +0.2
212,656 + GFF3367 0.61 +0.6
212,656 + GFF3367 0.61 +0.0
212,657 - GFF3367 0.61 -0.1
212,657 - GFF3367 0.61 -0.4
212,657 - GFF3367 0.61 +0.8
212,657 - GFF3367 0.61 -0.5
212,657 - GFF3367 0.61 -1.5
212,686 + GFF3367 0.65 +0.5
212,902 + -2.1
212,903 - +0.0
212,903 - -0.1
212,939 - +0.2
213,035 + -1.3
213,050 - -0.4
213,173 + GFF3368 0.15 -0.2
213,173 + GFF3368 0.15 -0.3
213,177 + GFF3368 0.15 -0.4
213,177 + GFF3368 0.15 +0.3

Or see this region's nucleotide sequence