Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3329 and GFF3330 overlap by 4 nucleotides GFF3330 and GFF3331 are separated by 35 nucleotides GFF3331 and GFF3332 are separated by 162 nucleotides
GFF3329 - Riboflavin transport system permease protein RibX, at 169,125 to 169,946
GFF3329
GFF3330 - Bicarbonate transport ATP-binding protein CmpD, at 169,943 to 170,722
GFF3330
GFF3331 - hypothetical protein, at 170,758 to 171,759
GFF3331
GFF3332 - Acetophenone carboxylase gamma subunit, at 171,922 to 174,015
GFF3332
Position (kb) 170
171
172 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 169.825 kb on + strand, within GFF3329 at 169.825 kb on + strand, within GFF3329 at 169.825 kb on + strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 169.826 kb on - strand, within GFF3329 at 170.004 kb on + strand at 170.004 kb on + strand at 170.646 kb on - strand at 170.685 kb on + strand at 170.686 kb on - strand at 170.686 kb on - strand at 170.715 kb on + strand at 170.715 kb on + strand at 170.716 kb on - strand at 170.716 kb on - strand at 170.716 kb on - strand at 170.784 kb on - strand at 170.868 kb on - strand, within GFF3331 at 170.889 kb on + strand, within GFF3331 at 170.889 kb on + strand, within GFF3331 at 170.899 kb on - strand, within GFF3331 at 171.016 kb on - strand, within GFF3331 at 171.017 kb on + strand, within GFF3331 at 171.017 kb on + strand, within GFF3331 at 171.017 kb on + strand, within GFF3331 at 171.017 kb on + strand, within GFF3331 at 171.017 kb on + strand, within GFF3331 at 171.018 kb on - strand, within GFF3331 at 171.018 kb on - strand, within GFF3331 at 171.018 kb on - strand, within GFF3331 at 171.105 kb on - strand, within GFF3331 at 171.105 kb on - strand, within GFF3331 at 171.224 kb on + strand, within GFF3331 at 171.224 kb on + strand, within GFF3331 at 171.224 kb on + strand, within GFF3331 at 171.224 kb on + strand, within GFF3331 at 171.224 kb on + strand, within GFF3331 at 171.224 kb on + strand, within GFF3331 at 171.225 kb on - strand, within GFF3331 at 171.978 kb on + strand at 171.994 kb on - strand at 172.157 kb on + strand, within GFF3332 at 172.158 kb on - strand, within GFF3332 at 172.350 kb on + strand, within GFF3332 at 172.351 kb on - strand, within GFF3332 at 172.416 kb on + strand, within GFF3332 at 172.417 kb on - strand, within GFF3332 at 172.417 kb on - strand, within GFF3332 at 172.417 kb on - strand, within GFF3332 at 172.417 kb on - strand, within GFF3332 at 172.417 kb on - strand, within GFF3332 at 172.447 kb on + strand, within GFF3332 at 172.447 kb on + strand, within GFF3332 at 172.552 kb on + strand, within GFF3332 at 172.552 kb on + strand, within GFF3332 at 172.552 kb on + strand, within GFF3332 at 172.553 kb on - strand, within GFF3332 at 172.553 kb on - strand, within GFF3332 at 172.586 kb on - strand, within GFF3332 at 172.609 kb on + strand, within GFF3332 at 172.609 kb on + strand, within GFF3332 at 172.610 kb on - strand, within GFF3332 at 172.610 kb on - strand, within GFF3332 at 172.610 kb on - strand, within GFF3332
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 169,825 + GFF3329 0.85 -0.6 169,825 + GFF3329 0.85 +0.4 169,825 + GFF3329 0.85 -0.7 169,826 - GFF3329 0.85 +0.1 169,826 - GFF3329 0.85 -0.1 169,826 - GFF3329 0.85 -0.8 169,826 - GFF3329 0.85 +0.2 170,004 + +0.5 170,004 + -0.0 170,646 - +0.0 170,685 + +1.0 170,686 - -1.0 170,686 - -0.0 170,715 + -0.4 170,715 + +0.6 170,716 - +0.3 170,716 - +0.7 170,716 - +1.2 170,784 - +0.1 170,868 - GFF3331 0.11 +0.6 170,889 + GFF3331 0.13 -1.2 170,889 + GFF3331 0.13 -0.2 170,899 - GFF3331 0.14 +0.4 171,016 - GFF3331 0.26 +0.8 171,017 + GFF3331 0.26 -0.5 171,017 + GFF3331 0.26 +0.4 171,017 + GFF3331 0.26 -0.1 171,017 + GFF3331 0.26 +1.1 171,017 + GFF3331 0.26 -0.6 171,018 - GFF3331 0.26 -0.6 171,018 - GFF3331 0.26 -0.4 171,018 - GFF3331 0.26 +0.6 171,105 - GFF3331 0.35 +1.0 171,105 - GFF3331 0.35 -1.3 171,224 + GFF3331 0.47 +0.1 171,224 + GFF3331 0.47 -0.0 171,224 + GFF3331 0.47 +0.4 171,224 + GFF3331 0.47 -1.2 171,224 + GFF3331 0.47 -0.5 171,224 + GFF3331 0.47 -0.2 171,225 - GFF3331 0.47 +0.1 171,978 + -1.3 171,994 - -0.0 172,157 + GFF3332 0.11 -0.9 172,158 - GFF3332 0.11 -0.5 172,350 + GFF3332 0.20 +0.2 172,351 - GFF3332 0.20 -0.8 172,416 + GFF3332 0.24 +0.1 172,417 - GFF3332 0.24 -0.3 172,417 - GFF3332 0.24 +1.1 172,417 - GFF3332 0.24 -0.2 172,417 - GFF3332 0.24 +1.0 172,417 - GFF3332 0.24 -0.3 172,447 + GFF3332 0.25 -0.7 172,447 + GFF3332 0.25 -0.8 172,552 + GFF3332 0.30 +0.1 172,552 + GFF3332 0.30 -1.2 172,552 + GFF3332 0.30 +0.8 172,553 - GFF3332 0.30 -3.0 172,553 - GFF3332 0.30 -0.3 172,586 - GFF3332 0.32 -0.6 172,609 + GFF3332 0.33 -0.9 172,609 + GFF3332 0.33 +0.4 172,610 - GFF3332 0.33 -1.0 172,610 - GFF3332 0.33 -0.5 172,610 - GFF3332 0.33 -0.3
Or see this region's nucleotide sequence