Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3322 and GFF3323 are separated by 182 nucleotides GFF3323 and GFF3324 are separated by 28 nucleotides
GFF3322 - HTH-type transcriptional regulator KipR, at 162,090 to 162,824
GFF3322
GFF3323 - hypothetical protein, at 163,007 to 163,981
GFF3323
GFF3324 - P-loop guanosine triphosphatase YjiA, at 164,010 to 165,038
GFF3324
Position (kb) 163
164 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 162.392 kb on - strand, within GFF3322 at 162.481 kb on + strand, within GFF3322 at 162.482 kb on - strand, within GFF3322 at 162.544 kb on + strand, within GFF3322 at 162.656 kb on - strand, within GFF3322 at 162.656 kb on - strand, within GFF3322 at 162.683 kb on - strand, within GFF3322 at 163.166 kb on + strand, within GFF3323 at 163.445 kb on + strand, within GFF3323 at 163.613 kb on + strand, within GFF3323 at 163.624 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.625 kb on + strand, within GFF3323 at 163.626 kb on - strand, within GFF3323 at 163.626 kb on - strand, within GFF3323 at 163.626 kb on - strand, within GFF3323 at 163.778 kb on + strand, within GFF3323 at 163.778 kb on + strand, within GFF3323 at 163.952 kb on + strand at 163.952 kb on + strand at 163.964 kb on + strand at 163.964 kb on + strand at 164.139 kb on + strand, within GFF3324 at 164.385 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.524 kb on + strand, within GFF3324 at 164.720 kb on + strand, within GFF3324 at 164.720 kb on + strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.721 kb on - strand, within GFF3324 at 164.825 kb on - strand, within GFF3324 at 164.976 kb on + strand at 164.977 kb on - strand at 164.977 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 162,392 - GFF3322 0.41 +2.9 162,481 + GFF3322 0.53 +1.3 162,482 - GFF3322 0.53 -0.8 162,544 + GFF3322 0.62 -0.7 162,656 - GFF3322 0.77 -1.5 162,656 - GFF3322 0.77 -0.5 162,683 - GFF3322 0.81 -0.9 163,166 + GFF3323 0.16 -0.5 163,445 + GFF3323 0.45 -0.2 163,613 + GFF3323 0.62 +0.4 163,624 + GFF3323 0.63 -0.8 163,625 + GFF3323 0.63 -0.4 163,625 + GFF3323 0.63 +0.4 163,625 + GFF3323 0.63 -2.0 163,625 + GFF3323 0.63 +0.1 163,626 - GFF3323 0.63 -0.0 163,626 - GFF3323 0.63 -1.8 163,626 - GFF3323 0.63 +0.1 163,778 + GFF3323 0.79 -1.3 163,778 + GFF3323 0.79 -0.0 163,952 + -0.1 163,952 + -2.2 163,964 + -1.9 163,964 + +0.8 164,139 + GFF3324 0.13 -0.4 164,385 + GFF3324 0.36 -1.0 164,524 + GFF3324 0.50 +0.3 164,524 + GFF3324 0.50 +0.1 164,524 + GFF3324 0.50 -0.0 164,720 + GFF3324 0.69 -0.9 164,720 + GFF3324 0.69 +0.1 164,721 - GFF3324 0.69 -0.8 164,721 - GFF3324 0.69 -0.9 164,721 - GFF3324 0.69 -0.7 164,825 - GFF3324 0.79 -0.3 164,976 + +1.3 164,977 - -0.3 164,977 - +0.5
Or see this region's nucleotide sequence