Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3209 and GFF3210 are separated by 80 nucleotides GFF3210 and GFF3211 are separated by 39 nucleotides GFF3211 and GFF3212 are separated by 23 nucleotides
GFF3209 - Sensor protein QseC, at 33,580 to 34,929
GFF3209
GFF3210 - hypothetical protein, at 35,010 to 35,363
GFF3210
GFF3211 - hypothetical protein, at 35,403 to 35,873
GFF3211
GFF3212 - hypothetical protein, at 35,897 to 38,104
GFF3212
Position (kb) 35
36 Strain fitness (log2 ratio) -2
-1
0
1 at 34.835 kb on + strand at 34.836 kb on - strand at 35.396 kb on + strand at 35.502 kb on + strand, within GFF3211 at 35.502 kb on + strand, within GFF3211 at 35.502 kb on + strand, within GFF3211 at 35.520 kb on + strand, within GFF3211 at 35.520 kb on + strand, within GFF3211 at 35.520 kb on + strand, within GFF3211 at 35.521 kb on - strand, within GFF3211 at 35.532 kb on + strand, within GFF3211 at 35.532 kb on + strand, within GFF3211 at 35.533 kb on - strand, within GFF3211 at 35.556 kb on + strand, within GFF3211 at 35.557 kb on - strand, within GFF3211 at 35.557 kb on - strand, within GFF3211 at 35.595 kb on + strand, within GFF3211 at 35.598 kb on + strand, within GFF3211 at 35.844 kb on + strand at 35.844 kb on + strand at 35.844 kb on + strand at 36.189 kb on - strand, within GFF3212 at 36.769 kb on - strand, within GFF3212
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 34,835 + -0.3 34,836 - -0.1 35,396 + +0.3 35,502 + GFF3211 0.21 +0.1 35,502 + GFF3211 0.21 -0.9 35,502 + GFF3211 0.21 -0.7 35,520 + GFF3211 0.25 -0.8 35,520 + GFF3211 0.25 -0.8 35,520 + GFF3211 0.25 -1.6 35,521 - GFF3211 0.25 -0.7 35,532 + GFF3211 0.27 +0.0 35,532 + GFF3211 0.27 +0.4 35,533 - GFF3211 0.28 +0.8 35,556 + GFF3211 0.32 +0.3 35,557 - GFF3211 0.33 +1.0 35,557 - GFF3211 0.33 -1.0 35,595 + GFF3211 0.41 -2.2 35,598 + GFF3211 0.41 -0.5 35,844 + -0.2 35,844 + +0.0 35,844 + -1.1 36,189 - GFF3212 0.13 +0.9 36,769 - GFF3212 0.39 -0.1
Or see this region's nucleotide sequence