Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3206 and GFF3207 are separated by 71 nucleotides GFF3207 and GFF3208 are separated by 133 nucleotides GFF3208 and GFF3209 overlap by 4 nucleotides
GFF3206 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 31,718 to 32,419
GFF3206
GFF3207 - hypothetical protein, at 32,491 to 32,778
GFF3207
GFF3208 - Transcriptional regulatory protein QseB, at 32,912 to 33,583
GFF3208
GFF3209 - Sensor protein QseC, at 33,580 to 34,929
GFF3209
Position (kb) 32
33
34 Strain fitness (log2 ratio) -2
-1
0
1 at 31.928 kb on + strand, within GFF3206 at 31.928 kb on + strand, within GFF3206 at 31.928 kb on + strand, within GFF3206 at 31.929 kb on - strand, within GFF3206 at 31.929 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.067 kb on - strand, within GFF3206 at 32.145 kb on - strand, within GFF3206 at 32.917 kb on + strand at 32.918 kb on - strand at 32.918 kb on - strand at 33.267 kb on - strand, within GFF3208 at 33.397 kb on - strand, within GFF3208 at 33.446 kb on + strand, within GFF3208 at 33.447 kb on - strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.488 kb on + strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.489 kb on - strand, within GFF3208 at 33.751 kb on + strand, within GFF3209 at 33.752 kb on - strand, within GFF3209 at 33.752 kb on - strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.832 kb on + strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.833 kb on - strand, within GFF3209 at 33.946 kb on + strand, within GFF3209
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 31,928 + GFF3206 0.30 -0.7 31,928 + GFF3206 0.30 +0.4 31,928 + GFF3206 0.30 -0.8 31,929 - GFF3206 0.30 +0.3 31,929 - GFF3206 0.30 +0.2 32,067 - GFF3206 0.50 -0.9 32,067 - GFF3206 0.50 -0.9 32,067 - GFF3206 0.50 +0.2 32,067 - GFF3206 0.50 -0.2 32,145 - GFF3206 0.61 -0.3 32,917 + +0.1 32,918 - +0.0 32,918 - -0.1 33,267 - GFF3208 0.53 -1.3 33,397 - GFF3208 0.72 -1.8 33,446 + GFF3208 0.79 +0.8 33,447 - GFF3208 0.80 +0.6 33,488 + GFF3208 0.86 -1.3 33,488 + GFF3208 0.86 -0.7 33,488 + GFF3208 0.86 -0.2 33,488 + GFF3208 0.86 +1.7 33,488 + GFF3208 0.86 -0.7 33,489 - GFF3208 0.86 +0.8 33,489 - GFF3208 0.86 +0.6 33,489 - GFF3208 0.86 -0.0 33,489 - GFF3208 0.86 +1.1 33,489 - GFF3208 0.86 +1.1 33,489 - GFF3208 0.86 -0.0 33,751 + GFF3209 0.13 +1.1 33,752 - GFF3209 0.13 -0.0 33,752 - GFF3209 0.13 -0.8 33,832 + GFF3209 0.19 -0.7 33,832 + GFF3209 0.19 -0.0 33,832 + GFF3209 0.19 -2.1 33,832 + GFF3209 0.19 +0.3 33,832 + GFF3209 0.19 -0.3 33,832 + GFF3209 0.19 +0.4 33,832 + GFF3209 0.19 -1.0 33,833 - GFF3209 0.19 -0.5 33,833 - GFF3209 0.19 -0.4 33,833 - GFF3209 0.19 +1.2 33,833 - GFF3209 0.19 +0.3 33,833 - GFF3209 0.19 -1.0 33,833 - GFF3209 0.19 +0.1 33,946 + GFF3209 0.27 +1.0
Or see this region's nucleotide sequence