Strain Fitness in Xanthobacter sp. DMC5 around GFF3203

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3202 and GFF3203 are separated by 93 nucleotidesGFF3203 and GFF3204 are separated by 47 nucleotides GFF3202 - hypothetical protein, at 26,891 to 27,712 GFF3202 GFF3203 - hypothetical protein, at 27,806 to 28,969 GFF3203 GFF3204 - hypothetical protein, at 29,017 to 30,993 GFF3204 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1at 26.866 kb on + strandat 26.866 kb on + strandat 26.867 kb on - strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.942 kb on + strandat 26.943 kb on - strandat 26.945 kb on - strandat 27.218 kb on + strand, within GFF3202at 27.218 kb on + strand, within GFF3202at 27.219 kb on - strand, within GFF3202at 27.219 kb on - strand, within GFF3202at 27.221 kb on + strand, within GFF3202at 27.221 kb on + strand, within GFF3202at 27.222 kb on - strand, within GFF3202at 27.461 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.515 kb on + strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.516 kb on - strand, within GFF3202at 27.669 kb on - strandat 28.259 kb on + strand, within GFF3203at 28.289 kb on + strand, within GFF3203at 28.289 kb on + strand, within GFF3203at 28.290 kb on - strand, within GFF3203at 28.376 kb on + strand, within GFF3203at 28.376 kb on + strand, within GFF3203at 28.376 kb on + strand, within GFF3203at 28.377 kb on - strand, within GFF3203at 28.392 kb on - strand, within GFF3203at 28.455 kb on + strand, within GFF3203at 28.456 kb on - strand, within GFF3203at 28.457 kb on + strand, within GFF3203at 28.481 kb on + strand, within GFF3203at 28.481 kb on + strand, within GFF3203at 28.481 kb on + strand, within GFF3203at 28.482 kb on - strand, within GFF3203at 28.494 kb on - strand, within GFF3203at 28.494 kb on - strand, within GFF3203at 28.494 kb on - strand, within GFF3203at 28.509 kb on + strand, within GFF3203at 28.529 kb on + strand, within GFF3203at 28.664 kb on - strand, within GFF3203at 28.689 kb on - strand, within GFF3203at 28.707 kb on + strand, within GFF3203at 28.856 kb on + strandat 28.856 kb on + strandat 28.859 kb on + strandat 28.860 kb on - strandat 28.860 kb on - strandat 28.860 kb on - strandat 28.860 kb on - strandat 28.943 kb on + strandat 28.943 kb on + strandat 28.944 kb on - strandat 29.129 kb on + strandat 29.161 kb on + strandat 29.326 kb on + strand, within GFF3204at 29.326 kb on + strand, within GFF3204at 29.327 kb on - strand, within GFF3204at 29.327 kb on - strand, within GFF3204at 29.327 kb on - strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.488 kb on + strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.489 kb on - strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.587 kb on + strand, within GFF3204at 29.588 kb on - strand, within GFF3204at 29.636 kb on - strand, within GFF3204at 29.638 kb on - strand, within GFF3204at 29.791 kb on + strand, within GFF3204at 29.791 kb on + strand, within GFF3204at 29.791 kb on + strand, within GFF3204at 29.792 kb on - strand, within GFF3204at 29.792 kb on - strand, within GFF3204at 29.792 kb on - strand, within GFF3204at 29.872 kb on + strand, within GFF3204at 29.872 kb on + strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204at 29.873 kb on - strand, within GFF3204

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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26,866 + +0.6
26,866 + +0.2
26,867 - +0.5
26,942 + +1.0
26,942 + +0.0
26,942 + -0.0
26,942 + -0.0
26,943 - -0.3
26,945 - +0.1
27,218 + GFF3202 0.40 -0.8
27,218 + GFF3202 0.40 +0.3
27,219 - GFF3202 0.40 -0.4
27,219 - GFF3202 0.40 -0.2
27,221 + GFF3202 0.40 -0.3
27,221 + GFF3202 0.40 +0.6
27,222 - GFF3202 0.40 -0.1
27,461 + GFF3202 0.69 +1.0
27,515 + GFF3202 0.76 -0.5
27,515 + GFF3202 0.76 +0.7
27,515 + GFF3202 0.76 -0.5
27,515 + GFF3202 0.76 -0.2
27,515 + GFF3202 0.76 -0.8
27,516 - GFF3202 0.76 -0.3
27,516 - GFF3202 0.76 +0.9
27,516 - GFF3202 0.76 -0.2
27,516 - GFF3202 0.76 -0.9
27,669 - +1.2
28,259 + GFF3203 0.39 +0.2
28,289 + GFF3203 0.41 +1.1
28,289 + GFF3203 0.41 -0.0
28,290 - GFF3203 0.42 -0.4
28,376 + GFF3203 0.49 -0.8
28,376 + GFF3203 0.49 -0.4
28,376 + GFF3203 0.49 -0.4
28,377 - GFF3203 0.49 -1.3
28,392 - GFF3203 0.50 +0.2
28,455 + GFF3203 0.56 +0.4
28,456 - GFF3203 0.56 -0.4
28,457 + GFF3203 0.56 +0.1
28,481 + GFF3203 0.58 -0.6
28,481 + GFF3203 0.58 +0.8
28,481 + GFF3203 0.58 +0.3
28,482 - GFF3203 0.58 -0.2
28,494 - GFF3203 0.59 +1.0
28,494 - GFF3203 0.59 +0.4
28,494 - GFF3203 0.59 +0.6
28,509 + GFF3203 0.60 -1.8
28,529 + GFF3203 0.62 +0.3
28,664 - GFF3203 0.74 -1.1
28,689 - GFF3203 0.76 -0.5
28,707 + GFF3203 0.77 +1.1
28,856 + -0.1
28,856 + -0.8
28,859 + +1.6
28,860 - -0.1
28,860 - -0.8
28,860 - +0.2
28,860 - -0.1
28,943 + -0.1
28,943 + +1.1
28,944 - -0.3
29,129 + +0.6
29,161 + +0.1
29,326 + GFF3204 0.16 -0.7
29,326 + GFF3204 0.16 -1.4
29,327 - GFF3204 0.16 -0.2
29,327 - GFF3204 0.16 +0.7
29,327 - GFF3204 0.16 +0.1
29,488 + GFF3204 0.24 +0.3
29,488 + GFF3204 0.24 -0.6
29,488 + GFF3204 0.24 -1.1
29,488 + GFF3204 0.24 -1.5
29,489 - GFF3204 0.24 -1.0
29,489 - GFF3204 0.24 +0.8
29,489 - GFF3204 0.24 +0.2
29,489 - GFF3204 0.24 +0.9
29,587 + GFF3204 0.29 -1.6
29,587 + GFF3204 0.29 -1.7
29,587 + GFF3204 0.29 -1.4
29,587 + GFF3204 0.29 +0.2
29,587 + GFF3204 0.29 -1.2
29,587 + GFF3204 0.29 -0.6
29,588 - GFF3204 0.29 -0.1
29,636 - GFF3204 0.31 -0.9
29,638 - GFF3204 0.31 +0.4
29,791 + GFF3204 0.39 -0.0
29,791 + GFF3204 0.39 -0.2
29,791 + GFF3204 0.39 +1.5
29,792 - GFF3204 0.39 +0.5
29,792 - GFF3204 0.39 +0.5
29,792 - GFF3204 0.39 +0.1
29,872 + GFF3204 0.43 +1.3
29,872 + GFF3204 0.43 +0.4
29,873 - GFF3204 0.43 +0.2
29,873 - GFF3204 0.43 +0.4
29,873 - GFF3204 0.43 -1.6
29,873 - GFF3204 0.43 -0.4
29,873 - GFF3204 0.43 -0.3
29,873 - GFF3204 0.43 -0.8

Or see this region's nucleotide sequence