Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3197 and GFF3198 overlap by 4 nucleotides GFF3198 and GFF3199 are separated by 41 nucleotides GFF3199 and GFF3200 are separated by 125 nucleotides
GFF3197 - Vitamin B12 import ATP-binding protein BtuD, at 21,218 to 23,026
GFF3197
GFF3198 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 23,023 to 23,781
GFF3198
GFF3199 - Kynurenine formamidase, at 23,823 to 24,518
GFF3199
GFF3200 - Acylamidase, at 24,644 to 26,050
GFF3200
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.910 kb on + strand at 22.910 kb on + strand at 22.911 kb on - strand at 22.911 kb on - strand at 22.976 kb on + strand at 22.977 kb on - strand at 22.977 kb on - strand at 22.977 kb on - strand at 22.977 kb on - strand at 22.977 kb on - strand at 22.977 kb on - strand at 22.977 kb on - strand at 23.078 kb on - strand at 23.086 kb on + strand at 23.087 kb on - strand at 23.359 kb on + strand, within GFF3198 at 23.360 kb on - strand, within GFF3198 at 23.360 kb on - strand, within GFF3198 at 23.648 kb on - strand, within GFF3198 at 23.674 kb on + strand, within GFF3198 at 23.674 kb on + strand, within GFF3198 at 23.674 kb on + strand, within GFF3198 at 23.674 kb on + strand, within GFF3198 at 23.675 kb on - strand, within GFF3198 at 23.675 kb on - strand, within GFF3198 at 23.675 kb on - strand, within GFF3198 at 23.675 kb on - strand, within GFF3198 at 24.144 kb on - strand, within GFF3199 at 24.225 kb on + strand, within GFF3199 at 24.226 kb on - strand, within GFF3199 at 24.287 kb on - strand, within GFF3199 at 24.287 kb on - strand, within GFF3199 at 24.288 kb on + strand, within GFF3199 at 24.288 kb on + strand, within GFF3199 at 24.289 kb on - strand, within GFF3199 at 24.528 kb on + strand at 24.528 kb on + strand at 24.548 kb on + strand at 24.548 kb on + strand at 24.549 kb on - strand at 24.554 kb on + strand at 24.554 kb on + strand at 24.554 kb on + strand at 24.554 kb on + strand at 24.554 kb on + strand at 24.554 kb on + strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.555 kb on - strand at 24.914 kb on + strand, within GFF3200 at 24.914 kb on + strand, within GFF3200 at 24.915 kb on - strand, within GFF3200 at 24.915 kb on - strand, within GFF3200 at 25.433 kb on + strand, within GFF3200 at 25.434 kb on - strand, within GFF3200 at 25.451 kb on + strand, within GFF3200
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 22,910 + -0.5 22,910 + +0.1 22,911 - -0.0 22,911 - -0.5 22,976 + +1.6 22,977 - +2.1 22,977 - -0.0 22,977 - -0.3 22,977 - +0.3 22,977 - +0.6 22,977 - +0.1 22,977 - -1.2 23,078 - -0.6 23,086 + +0.8 23,087 - -0.1 23,359 + GFF3198 0.44 +0.9 23,360 - GFF3198 0.44 -0.9 23,360 - GFF3198 0.44 -0.0 23,648 - GFF3198 0.82 +0.7 23,674 + GFF3198 0.86 -0.1 23,674 + GFF3198 0.86 -0.3 23,674 + GFF3198 0.86 -0.3 23,674 + GFF3198 0.86 +0.2 23,675 - GFF3198 0.86 -0.9 23,675 - GFF3198 0.86 +0.3 23,675 - GFF3198 0.86 +0.1 23,675 - GFF3198 0.86 -0.0 24,144 - GFF3199 0.46 +0.5 24,225 + GFF3199 0.58 +1.0 24,226 - GFF3199 0.58 -2.0 24,287 - GFF3199 0.67 -0.4 24,287 - GFF3199 0.67 -1.9 24,288 + GFF3199 0.67 +0.7 24,288 + GFF3199 0.67 -0.2 24,289 - GFF3199 0.67 +0.7 24,528 + -0.1 24,528 + -0.3 24,548 + +0.2 24,548 + -0.0 24,549 - -1.7 24,554 + -1.9 24,554 + +0.1 24,554 + +1.3 24,554 + -0.9 24,554 + -0.5 24,554 + +1.0 24,555 - -0.3 24,555 - -1.1 24,555 - -0.4 24,555 - -0.1 24,555 - -0.3 24,555 - +0.2 24,914 + GFF3200 0.19 -0.0 24,914 + GFF3200 0.19 +0.9 24,915 - GFF3200 0.19 +0.5 24,915 - GFF3200 0.19 +1.3 25,433 + GFF3200 0.56 +0.7 25,434 - GFF3200 0.56 -0.7 25,451 + GFF3200 0.57 -1.1
Or see this region's nucleotide sequence