Strain Fitness in Xanthobacter sp. DMC5 around GFF3182

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3181 and GFF3182 are separated by 241 nucleotidesGFF3182 and GFF3183 are separated by 278 nucleotides GFF3181 - hypothetical protein, at 254 to 1,048 GFF3181 GFF3182 - hypothetical protein, at 1,290 to 2,111 GFF3182 GFF3183 - hypothetical protein, at 2,390 to 5,161 GFF3183 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1at 0.301 kb on - strandat 0.714 kb on + strand, within GFF3181at 0.715 kb on - strand, within GFF3181at 0.715 kb on - strand, within GFF3181at 0.717 kb on + strand, within GFF3181at 0.718 kb on - strand, within GFF3181at 0.894 kb on + strand, within GFF3181at 0.895 kb on - strand, within GFF3181at 1.023 kb on - strandat 1.121 kb on + strandat 1.497 kb on + strand, within GFF3182at 1.498 kb on - strand, within GFF3182at 1.536 kb on + strand, within GFF3182at 1.537 kb on - strand, within GFF3182at 1.665 kb on + strand, within GFF3182at 1.823 kb on + strand, within GFF3182at 1.824 kb on - strand, within GFF3182at 1.826 kb on - strand, within GFF3182at 1.888 kb on + strand, within GFF3182at 1.888 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.983 kb on + strand, within GFF3182at 1.984 kb on - strand, within GFF3182at 1.998 kb on + strand, within GFF3182at 2.014 kb on - strand, within GFF3182at 2.096 kb on - strandat 2.096 kb on - strandat 2.096 kb on - strandat 2.150 kb on - strandat 2.173 kb on + strandat 2.174 kb on - strandat 2.299 kb on + strandat 2.299 kb on + strandat 2.322 kb on - strandat 2.422 kb on - strandat 2.585 kb on + strandat 2.585 kb on + strandat 2.585 kb on + strandat 2.585 kb on + strandat 2.586 kb on - strandat 2.586 kb on - strandat 2.780 kb on + strand, within GFF3183at 2.780 kb on + strand, within GFF3183at 2.780 kb on + strand, within GFF3183at 2.781 kb on - strand, within GFF3183at 2.822 kb on + strand, within GFF3183at 2.822 kb on + strand, within GFF3183at 2.822 kb on + strand, within GFF3183at 2.847 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.870 kb on + strand, within GFF3183at 2.871 kb on - strand, within GFF3183at 2.948 kb on - strand, within GFF3183at 2.952 kb on - strand, within GFF3183at 2.952 kb on - strand, within GFF3183at 3.104 kb on + strand, within GFF3183at 3.105 kb on - strand, within GFF3183at 3.105 kb on - strand, within GFF3183at 3.105 kb on - strand, within GFF3183

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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301 - -0.3
714 + GFF3181 0.58 -1.5
715 - GFF3181 0.58 -0.4
715 - GFF3181 0.58 -0.5
717 + GFF3181 0.58 -0.5
718 - GFF3181 0.58 -0.8
894 + GFF3181 0.81 -0.2
895 - GFF3181 0.81 -0.0
1,023 - -0.2
1,121 + +0.6
1,497 + GFF3182 0.25 +0.5
1,498 - GFF3182 0.25 +0.1
1,536 + GFF3182 0.30 -0.1
1,537 - GFF3182 0.30 +0.1
1,665 + GFF3182 0.46 +0.0
1,823 + GFF3182 0.65 +1.0
1,824 - GFF3182 0.65 +0.2
1,826 - GFF3182 0.65 -0.2
1,888 + GFF3182 0.73 -0.3
1,888 + GFF3182 0.73 +0.7
1,983 + GFF3182 0.84 -0.3
1,983 + GFF3182 0.84 +0.3
1,983 + GFF3182 0.84 +0.4
1,983 + GFF3182 0.84 +1.1
1,984 - GFF3182 0.84 -0.5
1,998 + GFF3182 0.86 -0.3
2,014 - GFF3182 0.88 -0.4
2,096 - +0.5
2,096 - -0.1
2,096 - +0.1
2,150 - -0.1
2,173 + +0.3
2,174 - -0.1
2,299 + +0.1
2,299 + -0.3
2,322 - -0.5
2,422 - -0.5
2,585 + +1.1
2,585 + -1.1
2,585 + -1.1
2,585 + -0.4
2,586 - -0.1
2,586 - +0.2
2,780 + GFF3183 0.14 +0.7
2,780 + GFF3183 0.14 -1.0
2,780 + GFF3183 0.14 -0.3
2,781 - GFF3183 0.14 +0.8
2,822 + GFF3183 0.16 +1.2
2,822 + GFF3183 0.16 +0.4
2,822 + GFF3183 0.16 -0.5
2,847 + GFF3183 0.16 -1.8
2,870 + GFF3183 0.17 -0.1
2,870 + GFF3183 0.17 -0.0
2,870 + GFF3183 0.17 +0.3
2,870 + GFF3183 0.17 +0.1
2,870 + GFF3183 0.17 -0.0
2,871 - GFF3183 0.17 +0.0
2,948 - GFF3183 0.20 -0.4
2,952 - GFF3183 0.20 +0.2
2,952 - GFF3183 0.20 -1.3
3,104 + GFF3183 0.26 +0.5
3,105 - GFF3183 0.26 -0.3
3,105 - GFF3183 0.26 -0.1
3,105 - GFF3183 0.26 +0.1

Or see this region's nucleotide sequence