Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3160 and GFF3161 are separated by 258 nucleotides GFF3161 and GFF3162 are separated by 261 nucleotides
GFF3160 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 896,670 to 898,697
GFF3160
GFF3161 - Propionyl-CoA carboxylase beta chain, at 898,956 to 900,488
GFF3161
GFF3162 - Propionyl-CoA carboxylase regulator, at 900,750 to 902,174
GFF3162
Position (kb) 898
899
900
901 Strain fitness (log2 ratio) -2
-1
0
1 at 898.453 kb on + strand, within GFF3160 at 898.454 kb on - strand, within GFF3160 at 898.730 kb on - strand at 898.730 kb on - strand at 898.730 kb on - strand at 898.774 kb on + strand at 899.272 kb on + strand, within GFF3161 at 899.647 kb on + strand, within GFF3161 at 899.833 kb on + strand, within GFF3161 at 899.837 kb on + strand, within GFF3161 at 899.837 kb on + strand, within GFF3161 at 899.837 kb on + strand, within GFF3161 at 899.923 kb on + strand, within GFF3161 at 899.923 kb on + strand, within GFF3161 at 899.923 kb on + strand, within GFF3161 at 899.924 kb on - strand, within GFF3161 at 899.924 kb on - strand, within GFF3161 at 900.079 kb on - strand, within GFF3161 at 900.079 kb on - strand, within GFF3161 at 900.337 kb on + strand at 900.340 kb on + strand at 900.518 kb on - strand at 900.852 kb on + strand at 900.852 kb on + strand at 900.853 kb on - strand at 900.853 kb on - strand at 900.909 kb on - strand, within GFF3162 at 901.270 kb on + strand, within GFF3162 at 901.278 kb on - strand, within GFF3162
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 898,453 + GFF3160 0.88 +0.0 898,454 - GFF3160 0.88 +0.8 898,730 - +1.4 898,730 - +0.2 898,730 - +0.9 898,774 + -0.8 899,272 + GFF3161 0.21 -1.8 899,647 + GFF3161 0.45 +0.4 899,833 + GFF3161 0.57 -1.2 899,837 + GFF3161 0.57 -0.7 899,837 + GFF3161 0.57 -0.4 899,837 + GFF3161 0.57 +1.3 899,923 + GFF3161 0.63 +1.3 899,923 + GFF3161 0.63 +0.5 899,923 + GFF3161 0.63 +0.0 899,924 - GFF3161 0.63 +1.2 899,924 - GFF3161 0.63 -0.6 900,079 - GFF3161 0.73 +0.0 900,079 - GFF3161 0.73 -0.4 900,337 + -0.6 900,340 + -1.6 900,518 - -0.7 900,852 + +0.4 900,852 + -0.2 900,853 - +0.9 900,853 - +0.3 900,909 - GFF3162 0.11 -0.4 901,270 + GFF3162 0.36 -0.3 901,278 - GFF3162 0.37 -0.9
Or see this region's nucleotide sequence