Strain Fitness in Xanthobacter sp. DMC5 around GFF3159

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3158 and GFF3159 are separated by 2 nucleotidesGFF3159 and GFF3160 are separated by 92 nucleotides GFF3158 - Ubiquinone biosynthesis O-methyltransferase, mitochondrial, at 894,857 to 896,086 GFF3158 GFF3159 - hypothetical protein, at 896,089 to 896,577 GFF3159 GFF3160 - Acetyl-/propionyl-coenzyme A carboxylase alpha chain, at 896,670 to 898,697 GFF3160 Position (kb) 896 897Strain fitness (log2 ratio) -2 -1 0 1 2at 895.098 kb on + strand, within GFF3158at 895.102 kb on - strand, within GFF3158at 895.102 kb on - strand, within GFF3158at 895.102 kb on - strand, within GFF3158at 895.186 kb on - strand, within GFF3158at 895.204 kb on - strand, within GFF3158at 895.204 kb on - strand, within GFF3158at 895.308 kb on + strand, within GFF3158at 895.369 kb on - strand, within GFF3158at 895.390 kb on - strand, within GFF3158at 895.390 kb on - strand, within GFF3158at 895.514 kb on - strand, within GFF3158at 895.515 kb on + strand, within GFF3158at 895.516 kb on - strand, within GFF3158at 895.516 kb on - strand, within GFF3158at 895.516 kb on - strand, within GFF3158at 895.711 kb on - strand, within GFF3158at 895.898 kb on - strand, within GFF3158at 895.898 kb on - strand, within GFF3158at 895.900 kb on - strand, within GFF3158at 895.900 kb on - strand, within GFF3158at 895.900 kb on - strand, within GFF3158at 895.900 kb on - strand, within GFF3158at 895.900 kb on - strand, within GFF3158at 896.007 kb on + strandat 896.208 kb on + strand, within GFF3159at 896.208 kb on + strand, within GFF3159at 896.209 kb on - strand, within GFF3159at 896.209 kb on - strand, within GFF3159at 896.271 kb on + strand, within GFF3159at 896.272 kb on - strand, within GFF3159at 896.316 kb on + strand, within GFF3159at 896.317 kb on - strand, within GFF3159at 896.317 kb on - strand, within GFF3159at 896.318 kb on + strand, within GFF3159at 896.319 kb on - strand, within GFF3159at 896.319 kb on - strand, within GFF3159at 896.319 kb on - strand, within GFF3159at 896.429 kb on + strand, within GFF3159at 896.429 kb on + strand, within GFF3159at 896.430 kb on - strand, within GFF3159at 896.430 kb on - strand, within GFF3159at 896.430 kb on - strand, within GFF3159at 896.430 kb on - strand, within GFF3159at 896.443 kb on - strand, within GFF3159at 896.466 kb on - strand, within GFF3159at 896.544 kb on - strandat 896.941 kb on + strand, within GFF3160at 897.566 kb on - strand, within GFF3160

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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895,098 + GFF3158 0.20 +1.0
895,102 - GFF3158 0.20 +0.2
895,102 - GFF3158 0.20 +0.1
895,102 - GFF3158 0.20 +0.0
895,186 - GFF3158 0.27 -1.8
895,204 - GFF3158 0.28 -1.2
895,204 - GFF3158 0.28 +0.4
895,308 + GFF3158 0.37 -0.6
895,369 - GFF3158 0.42 -0.1
895,390 - GFF3158 0.43 +0.3
895,390 - GFF3158 0.43 +0.3
895,514 - GFF3158 0.53 -0.3
895,515 + GFF3158 0.53 -1.2
895,516 - GFF3158 0.54 +0.9
895,516 - GFF3158 0.54 +0.0
895,516 - GFF3158 0.54 +0.1
895,711 - GFF3158 0.69 +0.4
895,898 - GFF3158 0.85 +0.6
895,898 - GFF3158 0.85 -1.4
895,900 - GFF3158 0.85 +1.0
895,900 - GFF3158 0.85 -0.0
895,900 - GFF3158 0.85 +0.1
895,900 - GFF3158 0.85 +0.1
895,900 - GFF3158 0.85 +0.6
896,007 + -1.3
896,208 + GFF3159 0.24 -0.7
896,208 + GFF3159 0.24 -0.2
896,209 - GFF3159 0.25 +0.2
896,209 - GFF3159 0.25 +1.3
896,271 + GFF3159 0.37 -0.7
896,272 - GFF3159 0.37 +0.6
896,316 + GFF3159 0.46 +1.3
896,317 - GFF3159 0.47 -1.5
896,317 - GFF3159 0.47 +0.6
896,318 + GFF3159 0.47 +0.4
896,319 - GFF3159 0.47 -0.6
896,319 - GFF3159 0.47 -0.4
896,319 - GFF3159 0.47 +0.7
896,429 + GFF3159 0.70 -1.3
896,429 + GFF3159 0.70 +0.1
896,430 - GFF3159 0.70 -0.8
896,430 - GFF3159 0.70 +0.3
896,430 - GFF3159 0.70 -0.3
896,430 - GFF3159 0.70 +2.0
896,443 - GFF3159 0.72 -0.2
896,466 - GFF3159 0.77 +0.4
896,544 - -2.2
896,941 + GFF3160 0.13 +0.0
897,566 - GFF3160 0.44 -0.3

Or see this region's nucleotide sequence