Strain Fitness in Xanthobacter sp. DMC5 around GFF3136

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3135 and GFF3136 are separated by 195 nucleotidesGFF3136 and GFF3137 are separated by 63 nucleotidesGFF3137 and GFF3138 are separated by 96 nucleotides GFF3135 - ATP phosphoribosyltransferase regulatory subunit, at 869,765 to 870,928 GFF3135 GFF3136 - hypothetical protein, at 871,124 to 871,513 GFF3136 GFF3137 - Exodeoxyribonuclease 7 small subunit, at 871,577 to 871,852 GFF3137 GFF3138 - hypothetical protein, at 871,949 to 872,539 GFF3138 Position (kb) 871 872Strain fitness (log2 ratio) -2 -1 0 1at 871.403 kb on + strand, within GFF3136at 871.404 kb on - strand, within GFF3136at 871.439 kb on + strand, within GFF3136at 871.439 kb on + strand, within GFF3136at 871.439 kb on + strand, within GFF3136at 871.440 kb on - strand, within GFF3136at 871.544 kb on + strandat 871.545 kb on - strandat 871.954 kb on - strandat 871.954 kb on - strandat 871.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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871,403 + GFF3136 0.72 +1.6
871,404 - GFF3136 0.72 -0.3
871,439 + GFF3136 0.81 +0.3
871,439 + GFF3136 0.81 +0.5
871,439 + GFF3136 0.81 -0.1
871,440 - GFF3136 0.81 +0.2
871,544 + +0.2
871,545 - -2.2
871,954 - -0.4
871,954 - -0.1
871,954 - -0.7

Or see this region's nucleotide sequence