Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3057 and GFF3058 are separated by 423 nucleotides GFF3058 and GFF3059 are separated by 279 nucleotides GFF3059 and GFF3060 are separated by 139 nucleotides
GFF3057 - hypothetical protein, at 786,834 to 787,049
GFF3057
GFF3058 - N-acetylmuramic acid 6-phosphate phosphatase, at 787,473 to 788,189
GFF3058
GFF3059 - hypothetical protein, at 788,469 to 788,936
GFF3059
GFF3060 - Ribose-5-phosphate isomerase A, at 789,076 to 789,783
GFF3060
Position (kb) 787
788
789 Strain fitness (log2 ratio) -2
-1
0
1 at 786.585 kb on - strand at 786.588 kb on + strand at 786.707 kb on + strand at 786.729 kb on + strand at 786.730 kb on - strand at 786.995 kb on + strand, within GFF3057 at 787.080 kb on - strand at 787.121 kb on + strand at 787.232 kb on - strand at 787.232 kb on - strand at 787.238 kb on + strand at 787.239 kb on - strand at 787.245 kb on - strand at 787.245 kb on - strand at 787.729 kb on + strand, within GFF3058 at 787.730 kb on - strand, within GFF3058 at 787.730 kb on - strand, within GFF3058 at 787.730 kb on - strand, within GFF3058 at 787.912 kb on + strand, within GFF3058 at 788.304 kb on - strand at 788.442 kb on - strand at 788.659 kb on - strand, within GFF3059 at 788.785 kb on - strand, within GFF3059 at 788.805 kb on + strand, within GFF3059 at 788.806 kb on - strand, within GFF3059 at 788.866 kb on - strand, within GFF3059 at 788.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 786,585 - -2.5 786,588 + -0.3 786,707 + -1.0 786,729 + -1.7 786,730 - +0.3 786,995 + GFF3057 0.75 +1.3 787,080 - +1.2 787,121 + -2.2 787,232 - -0.2 787,232 - -0.8 787,238 + +1.7 787,239 - -0.3 787,245 - +0.2 787,245 - -1.0 787,729 + GFF3058 0.36 -0.6 787,730 - GFF3058 0.36 +0.0 787,730 - GFF3058 0.36 -2.4 787,730 - GFF3058 0.36 -2.4 787,912 + GFF3058 0.61 -1.2 788,304 - -0.3 788,442 - -1.2 788,659 - GFF3059 0.41 +0.9 788,785 - GFF3059 0.68 -0.3 788,805 + GFF3059 0.72 +1.0 788,806 - GFF3059 0.72 +0.0 788,866 - GFF3059 0.85 +0.2 788,975 - -1.1
Or see this region's nucleotide sequence