Experiment: Methanol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3047 and GFF3048 are separated by 3 nucleotides GFF3048 and GFF3049 are separated by 20 nucleotides GFF3049 and GFF3050 are separated by 483 nucleotides GFF3050 and GFF3051 are separated by 71 nucleotides
GFF3047 - Bicarbonate transport ATP-binding protein CmpD, at 777,679 to 778,491
GFF3047
GFF3048 - Riboflavin transport system permease protein RibX, at 778,495 to 779,304
GFF3048
GFF3049 - hypothetical protein, at 779,325 to 780,341
GFF3049
GFF3050 - Cold shock protein CspA, at 780,825 to 781,031
GFF3050
GFF3051 - hypothetical protein, at 781,103 to 781,687
GFF3051
Position (kb) 779
780
781 Strain fitness (log2 ratio) -1
0
1
2 at 778.361 kb on + strand, within GFF3047 at 778.362 kb on - strand, within GFF3047 at 779.123 kb on - strand, within GFF3048 at 779.123 kb on - strand, within GFF3048 at 779.150 kb on - strand, within GFF3048 at 779.228 kb on + strand at 779.228 kb on + strand at 779.229 kb on - strand at 779.229 kb on - strand at 779.452 kb on - strand, within GFF3049 at 779.454 kb on + strand, within GFF3049 at 779.454 kb on + strand, within GFF3049 at 779.454 kb on + strand, within GFF3049 at 779.455 kb on - strand, within GFF3049 at 779.592 kb on + strand, within GFF3049 at 779.593 kb on - strand, within GFF3049 at 779.817 kb on + strand, within GFF3049 at 779.818 kb on - strand, within GFF3049 at 779.818 kb on - strand, within GFF3049 at 779.818 kb on - strand, within GFF3049 at 779.821 kb on + strand, within GFF3049 at 779.903 kb on + strand, within GFF3049 at 779.904 kb on - strand, within GFF3049 at 780.006 kb on + strand, within GFF3049 at 780.006 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.135 kb on + strand, within GFF3049 at 780.193 kb on - strand, within GFF3049 at 780.229 kb on - strand, within GFF3049 at 780.479 kb on + strand at 780.479 kb on + strand at 780.480 kb on - strand at 780.480 kb on - strand at 780.480 kb on - strand at 780.552 kb on + strand at 780.552 kb on + strand at 780.553 kb on - strand at 780.942 kb on + strand, within GFF3050 at 780.943 kb on - strand, within GFF3050 at 781.116 kb on + strand at 781.116 kb on + strand at 781.117 kb on - strand at 781.146 kb on + strand at 781.240 kb on - strand, within GFF3051 at 781.257 kb on + strand, within GFF3051 at 781.258 kb on - strand, within GFF3051 at 781.258 kb on - strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.302 kb on + strand, within GFF3051 at 781.303 kb on - strand, within GFF3051
Per-strain Table
Position Strand Gene LocusTag Fraction Methanol (C) remove 778,361 + GFF3047 0.84 +0.2 778,362 - GFF3047 0.84 +0.3 779,123 - GFF3048 0.78 -1.3 779,123 - GFF3048 0.78 +0.7 779,150 - GFF3048 0.81 -0.2 779,228 + -0.1 779,228 + +0.1 779,229 - +0.2 779,229 - +0.0 779,452 - GFF3049 0.12 +2.0 779,454 + GFF3049 0.13 +0.1 779,454 + GFF3049 0.13 +0.4 779,454 + GFF3049 0.13 +0.7 779,455 - GFF3049 0.13 -0.6 779,592 + GFF3049 0.26 -0.9 779,593 - GFF3049 0.26 +0.9 779,817 + GFF3049 0.48 +1.4 779,818 - GFF3049 0.48 +0.2 779,818 - GFF3049 0.48 +0.5 779,818 - GFF3049 0.48 -1.3 779,821 + GFF3049 0.49 -0.5 779,903 + GFF3049 0.57 -0.2 779,904 - GFF3049 0.57 -0.5 780,006 + GFF3049 0.67 -0.8 780,006 + GFF3049 0.67 +0.1 780,135 + GFF3049 0.80 +0.7 780,135 + GFF3049 0.80 +0.1 780,135 + GFF3049 0.80 -0.2 780,193 - GFF3049 0.85 -0.3 780,229 - GFF3049 0.89 +0.4 780,479 + -0.2 780,479 + -1.0 780,480 - +0.3 780,480 - -0.4 780,480 - -0.1 780,552 + -0.7 780,552 + -0.6 780,553 - +0.1 780,942 + GFF3050 0.57 -0.7 780,943 - GFF3050 0.57 +1.3 781,116 + +0.4 781,116 + +0.0 781,117 - +0.0 781,146 + +0.6 781,240 - GFF3051 0.23 +0.4 781,257 + GFF3051 0.26 -0.3 781,258 - GFF3051 0.26 -0.0 781,258 - GFF3051 0.26 +0.4 781,302 + GFF3051 0.34 +1.1 781,302 + GFF3051 0.34 +0.3 781,302 + GFF3051 0.34 -0.5 781,303 - GFF3051 0.34 +1.2
Or see this region's nucleotide sequence