Strain Fitness in Xanthobacter sp. DMC5 around GFF3043

Experiment: Methanol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3042 and GFF3043 are separated by 175 nucleotidesGFF3043 and GFF3044 overlap by 4 nucleotides GFF3042 - hypothetical protein, at 767,495 to 768,523 GFF3042 GFF3043 - Error-prone DNA polymerase, at 768,699 to 771,998 GFF3043 GFF3044 - Protein ImuB, at 771,995 to 773,500 GFF3044 Position (kb) 768 769 770 771 772Strain fitness (log2 ratio) -2 -1 0 1 2at 767.704 kb on - strand, within GFF3042at 767.704 kb on - strand, within GFF3042at 767.760 kb on + strand, within GFF3042at 767.760 kb on + strand, within GFF3042at 767.760 kb on + strand, within GFF3042at 767.761 kb on - strand, within GFF3042at 767.761 kb on - strand, within GFF3042at 767.886 kb on + strand, within GFF3042at 767.887 kb on - strand, within GFF3042at 767.887 kb on - strand, within GFF3042at 767.946 kb on + strand, within GFF3042at 767.946 kb on + strand, within GFF3042at 767.947 kb on - strand, within GFF3042at 768.225 kb on + strand, within GFF3042at 768.226 kb on - strand, within GFF3042at 768.252 kb on + strand, within GFF3042at 768.252 kb on + strand, within GFF3042at 768.258 kb on + strand, within GFF3042at 768.543 kb on + strandat 768.544 kb on - strandat 768.583 kb on + strandat 768.672 kb on - strandat 768.672 kb on - strandat 768.726 kb on + strandat 768.726 kb on + strandat 769.183 kb on + strand, within GFF3043at 769.184 kb on - strand, within GFF3043at 769.624 kb on + strand, within GFF3043at 769.624 kb on + strand, within GFF3043at 769.625 kb on - strand, within GFF3043at 769.625 kb on - strand, within GFF3043at 769.625 kb on - strand, within GFF3043at 769.625 kb on - strand, within GFF3043at 769.690 kb on + strand, within GFF3043at 769.690 kb on + strand, within GFF3043at 769.690 kb on + strand, within GFF3043at 769.691 kb on - strand, within GFF3043at 769.691 kb on - strand, within GFF3043at 769.702 kb on + strand, within GFF3043at 769.702 kb on + strand, within GFF3043at 769.703 kb on - strand, within GFF3043at 769.703 kb on - strand, within GFF3043at 769.703 kb on - strand, within GFF3043at 769.703 kb on - strand, within GFF3043at 769.747 kb on + strand, within GFF3043at 769.747 kb on + strand, within GFF3043at 769.983 kb on + strand, within GFF3043at 769.983 kb on + strand, within GFF3043at 769.984 kb on - strand, within GFF3043at 769.984 kb on - strand, within GFF3043at 770.033 kb on - strand, within GFF3043at 770.069 kb on - strand, within GFF3043at 770.082 kb on - strand, within GFF3043at 770.230 kb on + strand, within GFF3043at 770.231 kb on - strand, within GFF3043at 770.603 kb on + strand, within GFF3043at 770.735 kb on - strand, within GFF3043at 770.743 kb on + strand, within GFF3043at 770.743 kb on + strand, within GFF3043at 770.743 kb on + strand, within GFF3043at 770.743 kb on + strand, within GFF3043at 770.884 kb on + strand, within GFF3043at 770.884 kb on + strand, within GFF3043at 770.885 kb on - strand, within GFF3043at 770.952 kb on + strand, within GFF3043at 770.953 kb on - strand, within GFF3043at 770.953 kb on - strand, within GFF3043at 770.953 kb on - strand, within GFF3043at 770.977 kb on + strand, within GFF3043at 770.978 kb on - strand, within GFF3043at 770.986 kb on + strand, within GFF3043at 770.986 kb on + strand, within GFF3043at 770.986 kb on + strand, within GFF3043at 770.987 kb on - strand, within GFF3043at 771.145 kb on + strand, within GFF3043at 771.146 kb on - strand, within GFF3043at 771.146 kb on - strand, within GFF3043at 771.362 kb on - strand, within GFF3043at 771.362 kb on - strand, within GFF3043at 771.837 kb on - strandat 771.838 kb on + strandat 771.839 kb on - strandat 771.863 kb on + strandat 771.864 kb on - strandat 771.982 kb on + strandat 772.047 kb on + strandat 772.048 kb on - strandat 772.048 kb on - strandat 772.048 kb on - strandat 772.048 kb on - strandat 772.063 kb on - strandat 772.105 kb on - strandat 772.105 kb on - strandat 772.399 kb on + strand, within GFF3044at 772.399 kb on + strand, within GFF3044at 772.399 kb on + strand, within GFF3044at 772.400 kb on - strand, within GFF3044at 772.400 kb on - strand, within GFF3044at 772.418 kb on - strand, within GFF3044at 772.833 kb on + strand, within GFF3044at 772.834 kb on - strand, within GFF3044at 772.981 kb on - strand, within GFF3044at 772.981 kb on - strand, within GFF3044at 772.981 kb on - strand, within GFF3044

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Per-strain Table

Position Strand Gene LocusTag Fraction Methanol (C)
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767,704 - GFF3042 0.20 -0.1
767,704 - GFF3042 0.20 +0.6
767,760 + GFF3042 0.26 -1.4
767,760 + GFF3042 0.26 -0.0
767,760 + GFF3042 0.26 +1.3
767,761 - GFF3042 0.26 +0.8
767,761 - GFF3042 0.26 +0.3
767,886 + GFF3042 0.38 +0.6
767,887 - GFF3042 0.38 +0.4
767,887 - GFF3042 0.38 -1.2
767,946 + GFF3042 0.44 +1.0
767,946 + GFF3042 0.44 +0.1
767,947 - GFF3042 0.44 +0.0
768,225 + GFF3042 0.71 -1.0
768,226 - GFF3042 0.71 +0.2
768,252 + GFF3042 0.74 +2.2
768,252 + GFF3042 0.74 -0.4
768,258 + GFF3042 0.74 -0.8
768,543 + -1.2
768,544 - +0.6
768,583 + +0.0
768,672 - -0.1
768,672 - +0.5
768,726 + +0.3
768,726 + -0.2
769,183 + GFF3043 0.15 -0.8
769,184 - GFF3043 0.15 -0.1
769,624 + GFF3043 0.28 -1.3
769,624 + GFF3043 0.28 +1.0
769,625 - GFF3043 0.28 +0.7
769,625 - GFF3043 0.28 -0.1
769,625 - GFF3043 0.28 +0.2
769,625 - GFF3043 0.28 -0.5
769,690 + GFF3043 0.30 -0.7
769,690 + GFF3043 0.30 -0.2
769,690 + GFF3043 0.30 -0.5
769,691 - GFF3043 0.30 +1.6
769,691 - GFF3043 0.30 +0.4
769,702 + GFF3043 0.30 +0.0
769,702 + GFF3043 0.30 -0.8
769,703 - GFF3043 0.30 +0.3
769,703 - GFF3043 0.30 -0.9
769,703 - GFF3043 0.30 -0.6
769,703 - GFF3043 0.30 -0.4
769,747 + GFF3043 0.32 -0.3
769,747 + GFF3043 0.32 -0.9
769,983 + GFF3043 0.39 -0.0
769,983 + GFF3043 0.39 +1.2
769,984 - GFF3043 0.39 +1.0
769,984 - GFF3043 0.39 +0.2
770,033 - GFF3043 0.40 +0.1
770,069 - GFF3043 0.42 +1.1
770,082 - GFF3043 0.42 +0.1
770,230 + GFF3043 0.46 -1.7
770,231 - GFF3043 0.46 +1.0
770,603 + GFF3043 0.58 +0.0
770,735 - GFF3043 0.62 -0.6
770,743 + GFF3043 0.62 +0.5
770,743 + GFF3043 0.62 -0.4
770,743 + GFF3043 0.62 -2.7
770,743 + GFF3043 0.62 +0.4
770,884 + GFF3043 0.66 -0.8
770,884 + GFF3043 0.66 +0.1
770,885 - GFF3043 0.66 +0.2
770,952 + GFF3043 0.68 +0.4
770,953 - GFF3043 0.68 -0.2
770,953 - GFF3043 0.68 -0.0
770,953 - GFF3043 0.68 -0.4
770,977 + GFF3043 0.69 -0.1
770,978 - GFF3043 0.69 -0.2
770,986 + GFF3043 0.69 -0.5
770,986 + GFF3043 0.69 -0.1
770,986 + GFF3043 0.69 -0.3
770,987 - GFF3043 0.69 -0.4
771,145 + GFF3043 0.74 -1.3
771,146 - GFF3043 0.74 +1.0
771,146 - GFF3043 0.74 -1.1
771,362 - GFF3043 0.81 +0.0
771,362 - GFF3043 0.81 +0.5
771,837 - -0.2
771,838 + -0.3
771,839 - +0.8
771,863 + +1.7
771,864 - -0.5
771,982 + -0.5
772,047 + -0.4
772,048 - -1.8
772,048 - +0.4
772,048 - +0.1
772,048 - +0.5
772,063 - +0.6
772,105 - +0.1
772,105 - +0.1
772,399 + GFF3044 0.27 +0.8
772,399 + GFF3044 0.27 -0.7
772,399 + GFF3044 0.27 +0.6
772,400 - GFF3044 0.27 -0.6
772,400 - GFF3044 0.27 -0.7
772,418 - GFF3044 0.28 -0.5
772,833 + GFF3044 0.56 +0.3
772,834 - GFF3044 0.56 -0.1
772,981 - GFF3044 0.65 +0.2
772,981 - GFF3044 0.65 -1.0
772,981 - GFF3044 0.65 -0.9

Or see this region's nucleotide sequence